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1HHQ

Role of active site resiude Lys16 in Nucleoside Diphosphate Kinase

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU
Temperature [K]277
Detector technologyIMAGE PLATE
Spacegroup nameP 63 2 2
Unit cell lengths72.150, 72.150, 107.000
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution20.000 - 2.100
R-factor0.201

*

Rwork0.177
R-free0.24800

*

Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1npk
RMSD bond length0.013

*

RMSD bond angle1.910

*

Data reduction softwareMOSFLM
Data scaling softwareCCP4
Phasing softwareAMoRE
Refinement softwareX-PLOR (3.8)
Data quality characteristics
 Overall
Low resolution limit [Å]20.000
High resolution limit [Å]2.100
Rmerge0.050
Number of reflections11016
<I/σ(I)>10.1
Completeness [%]98.2

*

Redundancy4.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.5METHOD: HANGING DROP IN DROP: 5MG/ML PROTEIN, 50 MM TRIS HCL PH7.5, 1 M AS, 20MM MGCL2 IN WELL: 2M AS, 50MM TRISHCL PH7.5, 20MM MGCL2, pH 7.50
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein5 (mg/ml)
21dropTris-HCl50 (mM)
31dropammonium sulfate1 (M)
41drop20 (mM)
51reservoirammonium sulfate2 (M)

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PDB entries from 2024-05-15

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