1HHQ
Role of active site resiude Lys16 in Nucleoside Diphosphate Kinase
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | ROTATING ANODE |
| Source details | RIGAKU |
| Temperature [K] | 277 |
| Detector technology | IMAGE PLATE |
| Spacegroup name | P 63 2 2 |
| Unit cell lengths | 72.150, 72.150, 107.000 |
| Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
| Resolution | 20.000 - 2.100 |
| R-factor | 0.201 * |
| Rwork | 0.177 |
| R-free | 0.24800 * |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 1npk |
| RMSD bond length | 0.013 * |
| RMSD bond angle | 1.910 * |
| Data reduction software | MOSFLM |
| Data scaling software | CCP4 |
| Phasing software | AMoRE |
| Refinement software | X-PLOR (3.8) |
Data quality characteristics
| Overall | |
| Low resolution limit [Å] | 20.000 |
| High resolution limit [Å] | 2.100 |
| Rmerge | 0.050 |
| Number of reflections | 11016 |
| <I/σ(I)> | 10.1 |
| Completeness [%] | 98.2 * |
| Redundancy | 4.3 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | METHOD: HANGING DROP IN DROP: 5MG/ML PROTEIN, 50 MM TRIS HCL PH7.5, 1 M AS, 20MM MGCL2 IN WELL: 2M AS, 50MM TRISHCL PH7.5, 20MM MGCL2, pH 7.50 |
Crystallization Reagents in Literatures
| ID | crystal ID | solution | reagent name | concentration (unit) | details |
| 1 | 1 | drop | protein | 5 (mg/ml) | |
| 2 | 1 | drop | Tris-HCl | 50 (mM) | |
| 3 | 1 | drop | ammonium sulfate | 1 (M) | |
| 4 | 1 | drop | 20 (mM) | ||
| 5 | 1 | reservoir | ammonium sulfate | 2 (M) |






