1HHQ
Role of active site resiude Lys16 in Nucleoside Diphosphate Kinase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU |
Temperature [K] | 277 |
Detector technology | IMAGE PLATE |
Spacegroup name | P 63 2 2 |
Unit cell lengths | 72.150, 72.150, 107.000 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 20.000 - 2.100 |
R-factor | 0.201 * |
Rwork | 0.177 |
R-free | 0.24800 * |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1npk |
RMSD bond length | 0.013 * |
RMSD bond angle | 1.910 * |
Data reduction software | MOSFLM |
Data scaling software | CCP4 |
Phasing software | AMoRE |
Refinement software | X-PLOR (3.8) |
Data quality characteristics
Overall | |
Low resolution limit [Å] | 20.000 |
High resolution limit [Å] | 2.100 |
Rmerge | 0.050 |
Number of reflections | 11016 |
<I/σ(I)> | 10.1 |
Completeness [%] | 98.2 * |
Redundancy | 4.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | METHOD: HANGING DROP IN DROP: 5MG/ML PROTEIN, 50 MM TRIS HCL PH7.5, 1 M AS, 20MM MGCL2 IN WELL: 2M AS, 50MM TRISHCL PH7.5, 20MM MGCL2, pH 7.50 |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 5 (mg/ml) | |
2 | 1 | drop | Tris-HCl | 50 (mM) | |
3 | 1 | drop | ammonium sulfate | 1 (M) | |
4 | 1 | drop | 20 (mM) | ||
5 | 1 | reservoir | ammonium sulfate | 2 (M) |