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1H2D

Ebola virus matrix protein VP40 N-terminal domain in complex with RNA (Low-resolution VP40[31-212] variant).

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID14-4
Synchrotron siteESRF
BeamlineID14-4
Temperature [K]100
Spacegroup nameP 62 2 2
Unit cell lengths79.610, 79.610, 239.180
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution59.800

*

- 2.600
R-factor0.306
Rwork0.305
R-free0.32900
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1h2c
RMSD bond length0.009

*

RMSD bond angle1.420

*

Data reduction softwareMOSFLM
Data scaling softwareSCALA
Phasing softwareBEAST
Refinement softwareREFMAC
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]60.000
High resolution limit [Å]2.600
Rmerge0.0850.406

*

Total number of observations63464

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Number of reflections14356

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<I/σ(I)>4.5
Completeness [%]97.886

*

Redundancy4.43.6

*

Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion

*

7.5

*

1 UL OF PROTEIN (13 MG/ML) AND 1 UL OF WELL SOLUTION (100 MM NA-ACETATE PH4.6, 35 % MPD, 4 % GLYCEROL).HANGING DROP., pH 4.60
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein10 (mg/ml)
21reservoirHEPES100 (mM)pH7.5
31reservoir1.5 (M)
41reservoirMPD15 (%)

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PDB entries from 2024-05-15

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