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1GYJ

The Crystal Structure of YdcE, a 4-Oxalocrotonate Tautomerase Homologue from Escherichia coli, Confirms the Structural Basis for Oligomer Diversity

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU RU200
Temperature [K]110
Detector technologyIMAGE PLATE
Collection date2001-12-15
DetectorMARRESEARCH
Spacegroup nameP 21 21 21
Unit cell lengths37.250, 63.810, 71.340
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution30.000 - 2.100
R-factor0.225
Rwork0.225
R-free0.26200
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)UNPUBLISHED 1.35 ANG. RES. YDCE STRUCTURE DETERMINED BY MIR
RMSD bond length0.008

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RMSD bond angle1.400

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Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareMOLREP
Refinement softwareCNS (1.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.0002.180
High resolution limit [Å]2.1002.100
Rmerge0.0920.435

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Total number of observations169053

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Number of reflections10344
<I/σ(I)>11.53
Completeness [%]99.799.1
Redundancy1610
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, hanging drop

*

8.5

*

4

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PROTEIN BUFFERED IN 50MM SODIUM PHOSPHATE, PH 7.3 PRECIPITANT: 40% SODIUM CITRATE PH 8.5 ITTING DROP: MIX 5UL PROT. WITH 5UL 40% SODIUM CITRATE
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein20 (mg/ml)
21reservoirsodium citrate40 (%(w/v))pH8.5

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PDB entries from 2024-05-15

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