Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

1GYG

R32 CLOSED FORM OF ALPHA-TOXIN FROM CLOSTRIDIUM PERFRINGENS STRAIN CER89L43

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSRS BEAMLINE PX9.5
Synchrotron siteSRS
BeamlinePX9.5
Temperature [K]100
Detector technologyIMAGE PLATE
DetectorMARRESEARCH 300 MM
Spacegroup nameH 3 2
Unit cell lengths151.400, 151.400, 195.500
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution30.000

*

- 1.980

*

R-factor0.188

*

Rwork0.208
R-free0.23300

*

Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)INCOMPLETE EARLIER CHAIN TRACE OF OTHER CRYSTAL FORM
RMSD bond length0.007
RMSD bond angle1.872
Data scaling softwareSCALEPACK
Phasing softwareAMoRE
Refinement softwareCNS (3.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.000
High resolution limit [Å]1.980
Rmerge0.0580.193
Total number of observations257576

*

Number of reflections56901

*

Completeness [%]87.0
Redundancy2.62.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, hanging drop

*

7.5293

*

Basak, A., (1998) Acta Crystallogr., D54, 1425.

*

Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein9-10 (mg/ml)
21dropTris-HCl10 (mM)pH7.5
31reservoir1.7 (M)pH4.6
41reservoirsodium acetate

246031

PDB entries from 2025-12-10

PDB statisticsPDBj update infoContact PDBjnumon