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1GTE

DIHYDROPYRIMIDINE DEHYDROGENASE (DPD) FROM PIG, BINARY COMPLEX WITH 5-IODOURACIL

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsEMBL/DESY, HAMBURG BEAMLINE BW7B
Synchrotron siteEMBL/DESY, HAMBURG
BeamlineBW7B
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2000-02-26
DetectorMARRESEARCH
Spacegroup nameP 1 21 1
Unit cell lengths81.710, 158.370, 162.330
Unit cell angles90.00, 95.84, 90.00
Refinement procedure
Resolution24.980 - 1.650
R-factor0.181
Rwork0.181
R-free0.19700
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)DIHYDROPYRIMIDINE DEHYDROGENASE NON-LIGANDED FORM
RMSD bond length0.009
RMSD bond angle1.380

*

Data reduction softwareDENZO
Data scaling softwareSCALA
Phasing softwareAMoRE
Refinement softwareCNS (1.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]25.000

*

1.740
High resolution limit [Å]1.6501.650
Rmerge0.0470.238
Number of reflections481684

*

<I/σ(I)>154.3
Completeness [%]98.194.3
Redundancy3.22.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion

*

4.7293

*

Dobritzsch, D., (2001) Acta Crystallogr., 57, 153.

*

Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11reservoirPEG600017-22 (%(w/v))
21reservoirdithiothreitol10 (mM)
31reservoirsodium citrate100 (mM)pH4.7
41dropDPD4.5 (mg/ml)

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PDB entries from 2024-05-15

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