1G8O
CRYSTALLOGRAPHIC STRUCTURE OF THE NATIVE BOVINE ALPHA-1,3-GALACTOSYLTRANSFERASE CATALYTIC DOMAIN
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID14-2 |
Synchrotron site | ESRF |
Beamline | ID14-2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 1999-09-17 |
Detector | CUSTOM-MADE |
Wavelength(s) | 0.9324 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 95.558, 95.558, 112.711 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 15.000 * - 2.300 |
R-factor | 0.21 * |
Rwork | 0.274 |
R-free | 0.25000 * |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Model MAD solved at 2.8 Angstroms resolution 1fg5.pdb |
RMSD bond length | 0.016 |
RMSD bond angle | 1.800 |
Data reduction software | DENZO |
Data scaling software | CCP4 ((SCALA)) |
Phasing software | AMoRE |
Refinement software | CNS (1.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.000 | 2.390 |
High resolution limit [Å] | 2.300 | 2.300 |
Rmerge | 0.058 | 0.383 * |
Total number of observations | 434477 * | |
Number of reflections | 31286 * | |
<I/σ(I)> | 8 | 7.8 |
Completeness [%] | 96.5 * | 96 * |
Redundancy | 6.9 | 3.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 * | 20 * | 1.3 to 1.6 M Sodium Acetate, 10 mM UMP, 2 mM MnCl2, 500 mM NaCl, 0.1 M cacodylate, pH 6.50, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 10-20 (mg/ml) | |
2 | 1 | drop | Tris | 20 (mM) | |
3 | 1 | drop | 2 (mM) | ||
4 | 1 | drop | UMP | 10 (mM) | |
5 | 1 | drop | 500 (mM) | ||
6 | 1 | reservoir | sodium acetate | 1.3-1.6 (M) | |
7 | 1 | reservoir | cacodylate | 50 (mM) |