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1FVM

Complex of vancomycin with DI-acetyl-LYS-D-ALA-D-ALA

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPHOTON FACTORY BEAMLINE BL-6A
Synchrotron sitePhoton Factory
BeamlineBL-6A
Temperature [K]120
Detector technologyCCD
Collection date2000-06-24
DetectorADSC QUAMTUM 4R
Spacegroup nameP 21 21 21
Unit cell lengths35.637, 36.425, 65.728
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution5.000 - 1.800
R-factor0.144
Rwork0.144
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1aa5
RMSD bond length0.009
RMSD bond angle1.050
Data reduction softwareMOSFLM
Data scaling softwareCCP4 ((SCALA))
Phasing softwareAMoRE
Refinement softwareX-PLOR (3.851)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]25.5001.900
High resolution limit [Å]1.8001.800
Rmerge0.0460.072
Number of reflections8400
<I/σ(I)>11.78.5
Completeness [%]100.099.9
Redundancy6.86.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
18.5CRYSTALS WERE PREPARED AT 293K FROM A SOLUTION CONTAINING 6.6 MM VANCOMYCIN, 6.6 MM DI- ACETYL-LYS -D-ALA-D-ALA, 3.3 % (V/V) ETHANOL, AND 0.66 M TRIS BUFFER PH 8.5, BY EQUILIBRATING THE SOLUTION AGAINST A RESERVOIR SOLUTION CONTAINING 10 % (V/V) ETHANOL AND 0.2 M TRIS BUFFER PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.0K

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PDB entries from 2024-05-15

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