1FFN
CRYSTAL STRUCTURE OF MURINE CLASS I H-2DB COMPLEXED WITH PEPTIDE GP33(C9M)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | ROTATING ANODE |
| Source details | RIGAKU RU200 |
| Temperature [K] | 100 |
| Detector technology | IMAGE PLATE |
| Collection date | 2000-03-15 |
| Detector | RIGAKU RAXIS IIC |
| Spacegroup name | P 1 |
| Unit cell lengths | 47.258, 68.913, 81.751 |
| Unit cell angles | 72.92, 73.24, 69.97 |
Refinement procedure
| Resolution | 50.000 - 2.700 |
| Rwork | 0.240 |
| R-free | 0.28600 |
| RMSD bond length | 0.008 |
| RMSD bond angle | 24.900 * |
| Data reduction software | DENZO |
| Data scaling software | SCALEPACK |
| Phasing software | AMoRE |
| Refinement software | CNS (0.5) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 50.000 | 2.870 |
| High resolution limit [Å] | 2.700 | 2.700 |
| Rmerge | 0.119 | 0.354 |
| Total number of observations | 99827 * | |
| Number of reflections | 22352 | |
| <I/σ(I)> | 5.2 | |
| Completeness [%] | 89.8 | 85.6 |
| Redundancy | 2 | 2 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 298 | 14% PEG8000, 1% Dioxane, 25mM MES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
Crystallization Reagents in Literatures
| ID | crystal ID | solution | reagent name | concentration (unit) | details |
| 1 | 1 | drop | protein | 10 (mg/ml) | |
| 2 | 1 | drop | MES | 25 (mM) | pH6.5 |
| 3 | 1 | reservoir | PEG8000 | 10-20 (%) | |
| 4 | 1 | reservoir | MES | 25 (mM) | pH6.5 |
| 5 | 1 | reservoir | dioxane | 1 (%) |
