1FDZ
N-ACETYLNEURAMINATE LYASE IN COMPLEX WITH PYRUVATE VIA BOROHYDRIDE REDUCTION
Experimental procedure
Source type | ROTATING ANODE |
Source details | MACSCIENCE M18X |
Temperature [K] | 108 |
Detector technology | IMAGE PLATE |
Collection date | 1995-12 |
Detector | RIGAKU RAXIS IIC |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 121.000, 121.000, 196.120 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 6.000 - 2.600 |
R-factor | 0.2 |
Rwork | 0.200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1FDZ (ENZYME-3-HYDROXYPYRUVATE COMPLEX) |
RMSD bond length | 0.012 |
RMSD bond angle | 23.200 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | X-PLOR (3.1) |
Refinement software | X-PLOR (3.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 15.000 | 2.640 |
High resolution limit [Å] | 2.600 | 2.600 |
Rmerge | 0.094 | 0.389 |
Total number of observations | 203660 * | |
Number of reflections | 49914 | |
<I/σ(I)> | 12.6 | 2.67 |
Completeness [%] | 97.0 | 74 * |
Redundancy | 3.7 | 2.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Microdialysis * | 7.2 * | 4 * | HANGING DROP VAPOR DIFFUSION. WELL: 53% SATURATED AMMONIUM SULFATE, 75 MILLIMOLAR SODIUM PHOSPHATE BUFFER (PH 6.9). DROP: EQUAL VOLUMES OF WELL AND PRE-REACTED ENZYME, SIALIC ACID AND BOROHYDRIDE MIX (SEE JRNL), vapor diffusion - hanging drop |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | 1 | sodium phosphate | 20 (mM) | |
2 | 1 | 1 | azide | 0.02 (%) |