Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1FDZ

N-ACETYLNEURAMINATE LYASE IN COMPLEX WITH PYRUVATE VIA BOROHYDRIDE REDUCTION

Experimental procedure
Source typeROTATING ANODE
Source detailsMACSCIENCE M18X
Temperature [K]108
Detector technologyIMAGE PLATE
Collection date1995-12
DetectorRIGAKU RAXIS IIC
Spacegroup nameP 32 2 1
Unit cell lengths121.000, 121.000, 196.120
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution6.000 - 2.600
R-factor0.2
Rwork0.200
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1FDZ (ENZYME-3-HYDROXYPYRUVATE COMPLEX)
RMSD bond length0.012
RMSD bond angle23.200

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareX-PLOR (3.1)
Refinement softwareX-PLOR (3.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]15.0002.640
High resolution limit [Å]2.6002.600
Rmerge0.0940.389
Total number of observations203660

*

Number of reflections49914
<I/σ(I)>12.62.67
Completeness [%]97.074

*

Redundancy3.72.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Microdialysis

*

7.2

*

4

*

HANGING DROP VAPOR DIFFUSION. WELL: 53% SATURATED AMMONIUM SULFATE, 75 MILLIMOLAR SODIUM PHOSPHATE BUFFER (PH 6.9). DROP: EQUAL VOLUMES OF WELL AND PRE-REACTED ENZYME, SIALIC ACID AND BOROHYDRIDE MIX (SEE JRNL), vapor diffusion - hanging drop
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
111sodium phosphate20 (mM)
211azide0.02 (%)

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon