1FDZ
N-ACETYLNEURAMINATE LYASE IN COMPLEX WITH PYRUVATE VIA BOROHYDRIDE REDUCTION
Experimental procedure
| Source type | ROTATING ANODE |
| Source details | MACSCIENCE M18X |
| Temperature [K] | 108 |
| Detector technology | IMAGE PLATE |
| Collection date | 1995-12 |
| Detector | RIGAKU RAXIS IIC |
| Spacegroup name | P 32 2 1 |
| Unit cell lengths | 121.000, 121.000, 196.120 |
| Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
| Resolution | 6.000 - 2.600 |
| R-factor | 0.2 |
| Rwork | 0.200 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 1FDZ (ENZYME-3-HYDROXYPYRUVATE COMPLEX) |
| RMSD bond length | 0.012 |
| RMSD bond angle | 23.200 * |
| Data reduction software | DENZO |
| Data scaling software | SCALEPACK |
| Phasing software | X-PLOR (3.1) |
| Refinement software | X-PLOR (3.1) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 15.000 | 2.640 |
| High resolution limit [Å] | 2.600 | 2.600 |
| Rmerge | 0.094 | 0.389 |
| Total number of observations | 203660 * | |
| Number of reflections | 49914 | |
| <I/σ(I)> | 12.6 | 2.67 |
| Completeness [%] | 97.0 | 74 * |
| Redundancy | 3.7 | 2.4 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | Microdialysis * | 7.2 * | 4 * | HANGING DROP VAPOR DIFFUSION. WELL: 53% SATURATED AMMONIUM SULFATE, 75 MILLIMOLAR SODIUM PHOSPHATE BUFFER (PH 6.9). DROP: EQUAL VOLUMES OF WELL AND PRE-REACTED ENZYME, SIALIC ACID AND BOROHYDRIDE MIX (SEE JRNL), vapor diffusion - hanging drop |
Crystallization Reagents in Literatures
| ID | crystal ID | solution | reagent name | concentration (unit) | details |
| 1 | 1 | 1 | sodium phosphate | 20 (mM) | |
| 2 | 1 | 1 | azide | 0.02 (%) |






