1FDK
CARBOXYLIC ESTER HYDROLASE (PLA2-MJ33 INHIBITOR COMPLEX)
Experimental procedure
| Source type | ROTATING ANODE |
| Source details | RIGAKU R-AXIS II |
| Temperature [K] | 291 |
| Detector technology | IMAGE PLATE |
| Collection date | 1997-02-04 |
| Detector | RIGAKU RAXIS IIC |
| Spacegroup name | P 31 2 1 |
| Unit cell lengths | 46.360, 46.360, 102.560 |
| Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
| Resolution | 8.000 - 1.910 |
| R-factor | 0.184 |
| Rwork | 0.184 |
| R-free | 0.28000 |
| Structure solution method | THE HIGH RESOLUTION ATOMIC COORDINATES OF THE WILD TYPE WERE USED AS THE STARTING MODEL FOR REFINEMENT |
| Starting model (for MR) | WILD TYPE PLA2 |
| RMSD bond length | 0.013 |
| RMSD bond angle | 22.700 * |
| Data reduction software | R-AXIS (IIC) |
| Data scaling software | R-AXIS (II) |
| Phasing software | X-PLOR |
| Refinement software | X-PLOR |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 51.280 | 1.960 |
| High resolution limit [Å] | 1.910 | 1.910 |
| Rmerge | 0.087 | 0.411 |
| Total number of observations | 38344 * | |
| Number of reflections | 9907 | |
| Completeness [%] | 93.0 | 82 |
| Redundancy | 3 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 7.2 | CRYSTALS WERE GROWN BY CO-CRYSTALLIZATION BY THE HANGING DROP VAPOR DIFFUSION METHOD USING THE CONDITIONS 5 (MICRO)L OF THE MUTANT PROTEIN (15 MG/ML OF THE PROTEIN), 5MM CACL2, 50MM TRIS BUFFER, PH 7.2, 2.0 (MICRO)L OF 75% MPD IN THE DROPLET AND 1(MICRO)L OF MJ33 INHIBITOR SOLUTION (2.5MM CONCENTRATION). THE RESERVOIR CONTAINED (50%) OF MPD., vapor diffusion - hanging drop |
Crystallization Reagents in Literatures
| ID | crystal ID | solution | reagent name | concentration (unit) | details |
| 1 | 1 | drop | protein | 15 (mg/ml) | |
| 2 | 1 | drop | 5 (mM) | ||
| 3 | 1 | drop | Tris-HCl | 50 (mM) | |
| 4 | 1 | drop | MPD | 75 (%) | |
| 5 | 1 | drop | inhibitor | 2.5 (mM) | |
| 6 | 1 | reservoir | MPD | 50 (%) |






