1FDI
OXIDIZED FORM OF FORMATE DEHYDROGENASE H FROM E. COLI COMPLEXED WITH THE INHIBITOR NITRITE
Experimental procedure
Source type | ROTATING ANODE |
Source details | RIGAKU RUH2R |
Temperature [K] | 93 |
Detector technology | IMAGE PLATE |
Collection date | 1995-12 |
Detector | RIGAKU RAXIS |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 146.800, 146.800, 81.800 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 6.000 - 2.900 |
R-factor | 0.192 |
Rwork | 0.192 |
R-free | 0.28400 |
Structure solution method | DIFFERENCE FOURIER ANALYSIS USING PHASES FROM THE STRUCTURE OF OXIDIZED FDH-H (PDB ENTRY 1FDO) |
RMSD bond length | 0.014 |
RMSD bond angle | 25.000 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | X-PLOR (3.1) |
Refinement software | X-PLOR (3.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.000 |
High resolution limit [Å] | 2.900 | 2.900 |
Rmerge | 0.090 | 0.290 |
Total number of observations | 94068 * | |
Number of reflections | 19946 | |
<I/σ(I)> | 19.5 | 6.9 |
Completeness [%] | 97.7 | 99 |
Redundancy | 4.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, hanging drop * | 7.5 | drop solution was mixed with an equal volume of reservoir solution * |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 11 (mg/ml) | |
2 | 1 | reservoir | ammonium sulfate | 1.5-1.7 (M) | |
3 | 1 | reservoir | PEG400 | 1 (%) | |
4 | 1 | reservoir | sodium formate | 20 (mM) | |
5 | 1 | reservoir | HEPES/NaOH | 100 (mM) |