1EHI
D-ALANINE:D-LACTATE LIGASE (LMDDL2) OF VANCOMYCIN-RESISTANT LEUCONOSTOC MESENTEROIDES
Experimental procedure
| Experimental method | MAD |
| Source type | SYNCHROTRON |
| Source details | CHESS BEAMLINE A1 |
| Synchrotron site | CHESS |
| Beamline | A1 |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 1997-08-15 |
| Detector | ADSC |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 118.200, 90.800, 82.100 |
| Unit cell angles | 90.00, 92.10, 90.00 |
Refinement procedure
| Resolution | 100.000 - 2.380 |
| R-factor | 0.184 |
| Rwork | 0.184 |
| R-free | 0.25700 |
| Structure solution method | 3-wavelength MAD near Se edge (x12c at BNL) |
| RMSD bond length | 0.008 |
| RMSD bond angle | 1.400 |
| Data reduction software | DENZO ((DENZO)) |
| Data scaling software | SCALEPACK ((DENZO)) |
| Phasing software | SOLVE |
| Refinement software | X-PLOR (3.851) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 100.000 | 2.480 |
| High resolution limit [Å] | 2.380 | 2.380 |
| Rmerge | 0.072 | 0.210 |
| Total number of observations | 94338 * | |
| Number of reflections | 30564 | 1738 * |
| <I/σ(I)> | 11 | 3.8 |
| Completeness [%] | 82.0 | 47 |
| Redundancy | 3.1 | 2.5 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | Vapor diffusion * | 6.5 | PEG8000 15%, 0.1 M ammonium sulfate, 50mM NaCl, 2.4mM DTT, 1mM MgCl2, 3mM ATP, 3mM phosphinic acid, 50mM MES buffer., pH 6.5, VAPOR DIFFUSION, SITTING DROP |
Crystallization Reagents in Literatures
| ID | crystal ID | solution | reagent name | concentration (unit) | details |
| 1 | 1 | drop | protein | 3.5 (mg/ml) | |
| 10 | 1 | reservoir | ammonium sulfate | 0.2 (M) | |
| 11 | 1 | reservoir | MES | 0.1 (M) | |
| 2 | 1 | drop | PEG8000 | 15 (%) | |
| 3 | 1 | drop | ammonium sulfate | 0.1 (M) | |
| 4 | 1 | drop | 50 (mM) | ||
| 5 | 1 | drop | 1 (mM) | ||
| 6 | 1 | drop | ATP | 3 (mM) | |
| 7 | 1 | drop | phosphinate | 3 (mM) | |
| 8 | 1 | drop | MES | 50 (mM) | |
| 9 | 1 | reservoir | PEG | 30 (%) | or mPEG |






