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1EHI

D-ALANINE:D-LACTATE LIGASE (LMDDL2) OF VANCOMYCIN-RESISTANT LEUCONOSTOC MESENTEROIDES

Experimental procedure
Experimental methodMAD
Source typeSYNCHROTRON
Source detailsCHESS BEAMLINE A1
Synchrotron siteCHESS
BeamlineA1
Temperature [K]100
Detector technologyCCD
Collection date1997-08-15
DetectorADSC
Spacegroup nameC 1 2 1
Unit cell lengths118.200, 90.800, 82.100
Unit cell angles90.00, 92.10, 90.00
Refinement procedure
Resolution100.000 - 2.380
R-factor0.184
Rwork0.184
R-free0.25700
Structure solution method3-wavelength MAD near Se edge (x12c at BNL)
RMSD bond length0.008
RMSD bond angle1.400
Data reduction softwareDENZO ((DENZO))
Data scaling softwareSCALEPACK ((DENZO))
Phasing softwareSOLVE
Refinement softwareX-PLOR (3.851)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]100.0002.480
High resolution limit [Å]2.3802.380
Rmerge0.0720.210
Total number of observations94338

*

Number of reflections305641738

*

<I/σ(I)>113.8
Completeness [%]82.047
Redundancy3.12.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion

*

6.5PEG8000 15%, 0.1 M ammonium sulfate, 50mM NaCl, 2.4mM DTT, 1mM MgCl2, 3mM ATP, 3mM phosphinic acid, 50mM MES buffer., pH 6.5, VAPOR DIFFUSION, SITTING DROP
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein3.5 (mg/ml)
101reservoirammonium sulfate0.2 (M)
111reservoirMES0.1 (M)
21dropPEG800015 (%)
31dropammonium sulfate0.1 (M)
41drop50 (mM)
51drop1 (mM)
61dropATP3 (mM)
71dropphosphinate3 (mM)
81dropMES50 (mM)
91reservoirPEG30 (%)or mPEG

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PDB entries from 2024-05-15

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