1EHI
D-ALANINE:D-LACTATE LIGASE (LMDDL2) OF VANCOMYCIN-RESISTANT LEUCONOSTOC MESENTEROIDES
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | CHESS BEAMLINE A1 |
Synchrotron site | CHESS |
Beamline | A1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 1997-08-15 |
Detector | ADSC |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 118.200, 90.800, 82.100 |
Unit cell angles | 90.00, 92.10, 90.00 |
Refinement procedure
Resolution | 100.000 - 2.380 |
R-factor | 0.184 |
Rwork | 0.184 |
R-free | 0.25700 |
Structure solution method | 3-wavelength MAD near Se edge (x12c at BNL) |
RMSD bond length | 0.008 |
RMSD bond angle | 1.400 |
Data reduction software | DENZO ((DENZO)) |
Data scaling software | SCALEPACK ((DENZO)) |
Phasing software | SOLVE |
Refinement software | X-PLOR (3.851) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 100.000 | 2.480 |
High resolution limit [Å] | 2.380 | 2.380 |
Rmerge | 0.072 | 0.210 |
Total number of observations | 94338 * | |
Number of reflections | 30564 | 1738 * |
<I/σ(I)> | 11 | 3.8 |
Completeness [%] | 82.0 | 47 |
Redundancy | 3.1 | 2.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion * | 6.5 | PEG8000 15%, 0.1 M ammonium sulfate, 50mM NaCl, 2.4mM DTT, 1mM MgCl2, 3mM ATP, 3mM phosphinic acid, 50mM MES buffer., pH 6.5, VAPOR DIFFUSION, SITTING DROP |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 3.5 (mg/ml) | |
10 | 1 | reservoir | ammonium sulfate | 0.2 (M) | |
11 | 1 | reservoir | MES | 0.1 (M) | |
2 | 1 | drop | PEG8000 | 15 (%) | |
3 | 1 | drop | ammonium sulfate | 0.1 (M) | |
4 | 1 | drop | 50 (mM) | ||
5 | 1 | drop | 1 (mM) | ||
6 | 1 | drop | ATP | 3 (mM) | |
7 | 1 | drop | phosphinate | 3 (mM) | |
8 | 1 | drop | MES | 50 (mM) | |
9 | 1 | reservoir | PEG | 30 (%) | or mPEG |