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1DY6

Structure of the imipenem-hydrolyzing beta-lactamase SME-1

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsENRAF-NONIUS FR571
Temperature [K]291
Detector technologyDIFFRACTOMETER
DetectorENRAF-NONIUS FAST
Spacegroup nameP 1 21 1
Unit cell lengths81.500, 51.720, 71.690
Unit cell angles90.00, 118.62, 90.00
Refinement procedure
Resolution10.000 - 2.130
R-factor0.184
Rwork0.184
R-free0.24400
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)MODIFIED NMC-A BETA-LACTAMASE (1BUE) SOFTWARE USED: AMORE
RMSD bond length0.007
RMSD bond angle1.440
Data reduction softwareMADNESS
Data scaling softwareAgrovata
Phasing softwareX-PLOR (3.1)
Refinement softwareX-PLOR (3.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.000
High resolution limit [Å]2.1302.130

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Rmerge0.049

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0.216

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Total number of observations55772

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Number of reflections244471601

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Completeness [%]82.030.1

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Redundancy2.32.1

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Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, hanging drop

*

8.5PROTEIN WAS CRYSTALLIZED FROM 17% PEG 4000, 0.2 M AMMONIUM ACETATE, 0.1 M TRIS-HCL, PH 8.5
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11reservoirPEG400017 (%)
21reservoirammonium acetate0.2 (M)
31reservoirTris-HCl0.1 (M)

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PDB entries from 2024-05-15

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