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1DPL

A-DNA DECAMER GCGTA(T23)TACGC WITH INCORPORATED 2'-METHOXY-3'-METHYLENEPHOSPHATE-THYMIDINE

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 5ID-B
Synchrotron siteAPS
Beamline5ID-B
Temperature [K]120
Detector technologyCCD
Collection date1999-06-15
DetectorMARRESEARCH
Spacegroup nameP 21 21 21
Unit cell lengths24.627, 42.717, 46.906
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution20.000 - 0.830
R-factor0.117
Rwork0.115
R-free0.12100
RMSD bond length0.037
RMSD bond angle0.019
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareSHELXS
Refinement softwareSHELXL-97
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.0000.900
High resolution limit [Å]0.8300.830
Rmerge0.049
Total number of observations422954

*

Number of reflections47403
Completeness [%]99.798.8
Redundancy4.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6

*

293SPERMINE, MGCL2, NACL, KCL, SODIUM CACODYLATE BUFFER, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111SPERMINE
211SODIUM CACODYLATE BUFFER
311MGCL2
411NACL
511KCL
612MGCL2
712NACL
812KCL
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropdecamer1.25 (mM)single strand
21dropsodium cacodylate20 (mM)
31dropspermine6 (mM)
41drop10 (mM)
51drop40 (mM)
61reservoirMPD35 (%(v/v))

219869

PDB entries from 2024-05-15

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