1DPL
A-DNA DECAMER GCGTA(T23)TACGC WITH INCORPORATED 2'-METHOXY-3'-METHYLENEPHOSPHATE-THYMIDINE
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 5ID-B |
Synchrotron site | APS |
Beamline | 5ID-B |
Temperature [K] | 120 |
Detector technology | CCD |
Collection date | 1999-06-15 |
Detector | MARRESEARCH |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 24.627, 42.717, 46.906 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 20.000 - 0.830 |
R-factor | 0.117 |
Rwork | 0.115 |
R-free | 0.12100 |
RMSD bond length | 0.037 |
RMSD bond angle | 0.019 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | SHELXS |
Refinement software | SHELXL-97 |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 0.900 |
High resolution limit [Å] | 0.830 | 0.830 |
Rmerge | 0.049 | |
Total number of observations | 422954 * | |
Number of reflections | 47403 | |
Completeness [%] | 99.7 | 98.8 |
Redundancy | 4.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 * | 293 | SPERMINE, MGCL2, NACL, KCL, SODIUM CACODYLATE BUFFER, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
Crystallization Reagents
ID | crystal ID | solution ID | reagent name | concentration | details |
1 | 1 | 1 | SPERMINE | ||
2 | 1 | 1 | SODIUM CACODYLATE BUFFER | ||
3 | 1 | 1 | MGCL2 | ||
4 | 1 | 1 | NACL | ||
5 | 1 | 1 | KCL | ||
6 | 1 | 2 | MGCL2 | ||
7 | 1 | 2 | NACL | ||
8 | 1 | 2 | KCL |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | decamer | 1.25 (mM) | single strand |
2 | 1 | drop | sodium cacodylate | 20 (mM) | |
3 | 1 | drop | spermine | 6 (mM) | |
4 | 1 | drop | 10 (mM) | ||
5 | 1 | drop | 40 (mM) | ||
6 | 1 | reservoir | MPD | 35 (%(v/v)) |