1DPL
A-DNA DECAMER GCGTA(T23)TACGC WITH INCORPORATED 2'-METHOXY-3'-METHYLENEPHOSPHATE-THYMIDINE
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | APS BEAMLINE 5ID-B |
| Synchrotron site | APS |
| Beamline | 5ID-B |
| Temperature [K] | 120 |
| Detector technology | CCD |
| Collection date | 1999-06-15 |
| Detector | MARRESEARCH |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 24.627, 42.717, 46.906 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 20.000 - 0.830 |
| R-factor | 0.117 |
| Rwork | 0.115 |
| R-free | 0.12100 |
| RMSD bond length | 0.037 |
| RMSD bond angle | 0.019 |
| Data reduction software | DENZO |
| Data scaling software | SCALEPACK |
| Phasing software | SHELXS |
| Refinement software | SHELXL-97 |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 20.000 | 0.900 |
| High resolution limit [Å] | 0.830 | 0.830 |
| Rmerge | 0.049 | |
| Total number of observations | 422954 * | |
| Number of reflections | 47403 | |
| Completeness [%] | 99.7 | 98.8 |
| Redundancy | 4.8 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 6 * | 293 | SPERMINE, MGCL2, NACL, KCL, SODIUM CACODYLATE BUFFER, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
Crystallization Reagents
| ID | crystal ID | solution ID | reagent name | concentration | details |
| 1 | 1 | 1 | SPERMINE | ||
| 2 | 1 | 1 | SODIUM CACODYLATE BUFFER | ||
| 3 | 1 | 1 | MGCL2 | ||
| 4 | 1 | 1 | NACL | ||
| 5 | 1 | 1 | KCL | ||
| 6 | 1 | 2 | MGCL2 | ||
| 7 | 1 | 2 | NACL | ||
| 8 | 1 | 2 | KCL |
Crystallization Reagents in Literatures
| ID | crystal ID | solution | reagent name | concentration (unit) | details |
| 1 | 1 | drop | decamer | 1.25 (mM) | single strand |
| 2 | 1 | drop | sodium cacodylate | 20 (mM) | |
| 3 | 1 | drop | spermine | 6 (mM) | |
| 4 | 1 | drop | 10 (mM) | ||
| 5 | 1 | drop | 40 (mM) | ||
| 6 | 1 | reservoir | MPD | 35 (%(v/v)) |






