1DI2
CRYSTAL STRUCTURE OF A DSRNA-BINDING DOMAIN COMPLEXED WITH DSRNA: MOLECULAR BASIS OF DOUBLE-STRANDED RNA-PROTEIN INTERACTIONS
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RU200 |
Temperature [K] | 113 |
Detector technology | IMAGE PLATE |
Collection date | 1996-01-25 |
Detector | RIGAKU RAXIS IIC |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 110.400, 58.500, 58.900 |
Unit cell angles | 90.00, 105.20, 90.00 |
Refinement procedure
Resolution | 15.000 - 1.900 |
R-factor | 0.231 |
Rwork | 0.228 |
R-free | 0.25800 |
Structure solution method | SIR |
RMSD bond length | 0.006 |
RMSD bond angle | 15.900 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | MLPHARE |
Refinement software | CNS |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 99.000 | 1.960 |
High resolution limit [Å] | 1.890 | 1.890 |
Rmerge | 0.063 | 0.287 |
Number of reflections | 26083 | |
<I/σ(I)> | 10 | 2.5 |
Completeness [%] | 90.8 | 50 |
Redundancy | 2.4 | 1.66 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.4 | 298 | PEG 4000, ETHYLENE GLYCOL, KCL, NACL, MES, DTT, BETA-MERCAPTOETHANOL, pH 5.4, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K |
Crystallization Reagents
ID | crystal ID | solution ID | reagent name | concentration | details |
1 | 1 | 1 | KCL | ||
2 | 1 | 1 | NACL | ||
3 | 1 | 1 | MES | ||
4 | 1 | 1 | DTT | ||
5 | 1 | 1 | BETA-MERCAPTOETHANOL | ||
6 | 1 | 1 | ETHYLENE GLYCOL | ||
7 | 1 | 1 | PEG 4000 | ||
8 | 1 | 2 | ETHYLENE GLYCOL | ||
9 | 1 | 2 | PEG 4000 |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | Xlrbpa-2 | 0.7 (mM) | |
2 | 1 | drop | r(GGCGCGCGCC) | 0.7 (mM) | |
3 | 1 | reservoir | 225 (mM) | ||
4 | 1 | reservoir | 50 (mM) | ||
5 | 1 | reservoir | PEG4000 | 1 (%) | |
6 | 1 | reservoir | ehthylene glycol | 12 (%) | |
7 | 1 | reservoir | MES | 100 (mM) | |
8 | 1 | reservoir | dithiothreitol | 10 (mM) | |
9 | 1 | reservoir | beta-mercaptoethanol | 10 (mM) |