Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

1DI2

CRYSTAL STRUCTURE OF A DSRNA-BINDING DOMAIN COMPLEXED WITH DSRNA: MOLECULAR BASIS OF DOUBLE-STRANDED RNA-PROTEIN INTERACTIONS

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU RU200
Temperature [K]113
Detector technologyIMAGE PLATE
Collection date1996-01-25
DetectorRIGAKU RAXIS IIC
Spacegroup nameC 1 2 1
Unit cell lengths110.400, 58.500, 58.900
Unit cell angles90.00, 105.20, 90.00
Refinement procedure
Resolution15.000 - 1.900
R-factor0.231
Rwork0.228
R-free0.25800
Structure solution methodSIR
RMSD bond length0.006
RMSD bond angle15.900

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareMLPHARE
Refinement softwareCNS
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]99.0001.960
High resolution limit [Å]1.8901.890
Rmerge0.0630.287
Number of reflections26083
<I/σ(I)>102.5
Completeness [%]90.850
Redundancy2.41.66
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.4298PEG 4000, ETHYLENE GLYCOL, KCL, NACL, MES, DTT, BETA-MERCAPTOETHANOL, pH 5.4, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111KCL
211NACL
311MES
411DTT
511BETA-MERCAPTOETHANOL
611ETHYLENE GLYCOL
711PEG 4000
812ETHYLENE GLYCOL
912PEG 4000
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropXlrbpa-20.7 (mM)
21dropr(GGCGCGCGCC)0.7 (mM)
31reservoir225 (mM)
41reservoir50 (mM)
51reservoirPEG40001 (%)
61reservoirehthylene glycol12 (%)
71reservoirMES100 (mM)
81reservoirdithiothreitol10 (mM)
91reservoirbeta-mercaptoethanol10 (mM)

229380

PDB entries from 2024-12-25

PDB statisticsPDBj update infoContact PDBjnumon