Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1DB4

HUMAN S-PLA2 IN COMPLEX WITH INDOLE 8

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU RU200
Temperature [K]295
Detector technologyIMAGE PLATE
Collection date1994-01-01
DetectorRIGAKU RAXIS IIC
Spacegroup nameP 61 2 2
Unit cell lengths77.012, 77.012, 91.620
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution30.000 - 2.200
R-factor0.226
Rwork0.226
R-free0.25600
RMSD bond length0.009
RMSD bond angle24.330

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareX-PLOR
Refinement softwareX-PLOR (98.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.0002.240
High resolution limit [Å]2.2002.200
Rmerge0.0690.286
<I/σ(I)>20.43.9
Completeness [%]95.694.2
Redundancy3.43.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION729710 MG/ML OF PROTEIN; 50 MM BUFFER (MES OR MOPS), 1% PYRIDINE, pH 7.0, VAPOR DIFFUSION, temperature 297K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein10 (mg/ml)
21dropMES50 (mM)or MOPS
31dropsodium chloride80-92 (%sat)
41droppyridine1 (%)

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon