Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

1D27

HIGH-RESOLUTION STRUCTURE OF A MUTAGENIC LESION IN DNA

Experimental procedure
Source typeROTATING ANODE
Detector technologyDIFFRACTOMETER
Spacegroup nameP 21 21 21
Unit cell lengths25.440, 40.700, 65.990
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution7.000 - 2.000
R-factor0.185
RMSD bond length0.013
RMSD bond angle0.029
Refinement softwareNUCLSQ
Data quality characteristics
 Overall
High resolution limit [Å]2.000
Rmerge0.030

*

Number of reflections4557
Completeness [%]91.0

*

Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION6.3277pH 6.30, VAPOR DIFFUSION, temperature 277.00K
1VAPOR DIFFUSION6.3277pH 6.30, VAPOR DIFFUSION, temperature 277.00K
1VAPOR DIFFUSION6.3277pH 6.30, VAPOR DIFFUSION, temperature 277.00K
Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111WATER
211HEXYLENE GLYCOL
311MGCL2
411SPERMINE
511NA CACODYLATE
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropoligonucleotide1.0 (mM)
21drop33 (mM)
31drophexylene glycol16.7 (%(v/v))
41dropspermine1.25 (mM)
51dropsodium cacodylate5 (mM)

237735

PDB entries from 2025-06-18

PDB statisticsPDBj update infoContact PDBjnumon