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1CW4

CRYSTAL STRUCTURE OF K230M ISOCITRATE DEHYDROGENASE IN COMPLEX WITH ALPHA-KETOGLUTARATE

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL7-1
Synchrotron siteSSRL
BeamlineBL7-1
Temperature [K]110
Detector technologyIMAGE PLATE
DetectorMARRESEARCH
Spacegroup nameP 43 21 2
Unit cell lengths102.800, 102.800, 150.100
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution5.000 - 2.100
R-factor0.184
Rwork0.184
R-free0.22900

*

RMSD bond length0.006
RMSD bond angle23.700

*

Data reduction softwareDENZO
Data scaling softwareCCP4 ((SCALA))
Phasing softwareX-PLOR
Refinement softwareX-PLOR (3.1)
Data quality characteristics
 Overall
Low resolution limit [Å]100.000
High resolution limit [Å]2.100
Rmerge0.062
Total number of observations187148

*

Number of reflections41038

*

<I/σ(I)>10.6
Completeness [%]90.9
Redundancy4.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.8298AMMONIUM SULFATE, DTT, NAN3, MN-ALPHA-KETOGLUTARATE, pH 5.8, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11reservoirammonium sulfate38-55 (%sat)
21reservoirdithiothreitol1 (mM)
31reservoir0.02 (%(v/v))
41reservoirmeta-ligand solution1 (mM)

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PDB entries from 2024-05-15

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