Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1AP2

SINGLE CHAIN FV OF C219

Experimental procedure
Source typeROTATING ANODE
Source detailsRIGAKU
Temperature [K]298
Detector technologyAREA DETECTOR
Collection date1997-05
DetectorXUONG-HAMLIN MULTIWIRE
Spacegroup nameP 21 21 21
Unit cell lengths59.040, 64.350, 154.110
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution6.000 - 2.360
R-factor0.206

*

Rwork0.204
R-free0.28500

*

Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1igm
RMSD bond length0.006
RMSD bond angle1.110

*

Data reduction softwareSDMS
Data scaling softwareSDMS
Phasing softwareX-PLOR (3.851)
Refinement softwareX-PLOR (3.851)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.550
High resolution limit [Å]2.3602.360
Rmerge0.098

*

0.277

*

Total number of observations81247

*

Number of reflections226163671

*

<I/σ(I)>9.72.8
Completeness [%]91.676.1
Redundancy3.62.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP4.5THE PROTEIN WAS CRYSTALLIZED IN 21% PEG 6000, 100 MM SODIUM CITRATE PH 4.5, IN HANGING DROPS CONTAINING SUBTILISIN CARLSBERG IN A 1:100 MOLAR RATIO., vapor diffusion - hanging drop THE DEPOSITORS CRYSTALLIZED THE SINGLE CHAIN FV IN THE PRESENCE OF SUBTILISIN, AS DESCRIBED IN THE PRIMARY REFERENCE. THE SEQUENCE OF THE SINGLE CHAIN IS DIVMTQSPSSLTVTAGEKVTMSCKSSQSLLNSGNQKNYLTWYQQKPGQPPKLLIYWAS TRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCQNDYSYPLTFGAGTKLEP (LIGHT CHAINS A AND C) GGGGSGGGGSGKSGGGG (LINKER) EVQLQQSGAELVRPGASVKLSCTASGFNIKDDFMHWVKQRPEQGLEWIGRIDPANDNT KYAPKFQDKATIIADTSSNTAYLQLSSLTSEDTAVYYCARREVYSYYSPLDVWGAGTT VTVPSG (HEAVY CHAINS B AND D) SEQKLISEEDLNHHHHH (C-MYC TAG + 5XHIS TAG) THE DEPOSITORS HAVE NOT DETERMINED WHERE SUBTILISIN CLEAVES EXACTLY, BUT THE MOBILITY ON SDS GELS SUGGESTS THAT THE MOST OF THE LINKER AND MOST OF BOTH TAGS ARE REMOVED.
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein7 (mg/ml)
21dropTris-HCl10 (mM)
31reservoirsodium citrate100 (mM)
41reservoirPEG600021 (%(w/v))
51reservoirsubtilisin

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon