Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1AD5

SRC FAMILY KINASE HCK-AMP-PNP COMPLEX

Experimental procedure
Source typeROTATING ANODE
Source detailsRIGAKU RUH2R
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date1996-11
DetectorRIGAKU
Spacegroup nameP 21 21 21
Unit cell lengths72.767, 92.360, 178.290
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution18.000 - 2.600
R-factor0.239
Rwork0.239
R-free0.30700
Structure solution methodMIRAS/MAD
RMSD bond length0.016
RMSD bond angle3.200
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwarePHASES
Refinement softwareX-PLOR (3.8)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]18.0002.700
High resolution limit [Å]2.6002.600
Rmerge0.0530.189
Total number of observations346924

*

Number of reflections34027
<I/σ(I)>123
Completeness [%]96.892.8
Redundancy10.210.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, hanging drop

*

6.5292HANGING DROPS (1UL) OF 50MG/ML PROTEIN AND 10MM AMP-PNP WERE MIXED WITH EQUAL VOLUMES OF RESERVOIR BUFFER CONTAINING 150 MM CALCIUM ACETATE, 100MM CACODYLATE (PH 6.5), 7% PEG 8000 AND 16% V/V ETHYLENE GLYCOL. THE MIXED DROPS WERE THEN SEEDED AND STORED AT 19 DEGREES C., vapor diffusion - hanging drop and seeding, temperature 292K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein25 (mg/ml)
101reservoirethylene glycol16 (%(v/v))
21dropquercetin5 (mM)can be replaced by 2AMP-PMP
31dropcalcium acetate75 (mM)
41dropcacodylate50 (mM)
51dropPEG80003.5 (%(w/v))
61dropethylene glycol8 (%(v/v))
71reservoircalcium acetate150 (mM)
81reservoircacodylate100 (mM)
91reservoirPEG80007 (%(w/v))

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon