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Updated PDB entries
9N59
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BU of 9n59 by Molmil
CryoEM structure of the Azotobacter vinelandii flagellar filament
Descriptor: Flagellin
Authors:Warmack, R.A.
Deposit date:2025-02-03
Release date:2025-07-16
Last modified:2025-07-30
Method:ELECTRON MICROSCOPY (2.82 Å)
Cite:CryoEM-enabled visual proteomics reveals de novo structures of oligomeric protein complexes.
Structure, 2025
9N5A
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BU of 9n5a by Molmil
CryoEM structure of Azotobacter vinelandii bacterioferritin
Descriptor: Bacterioferritin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Warmack, R.A.
Deposit date:2025-02-03
Release date:2025-07-16
Last modified:2025-07-30
Method:ELECTRON MICROSCOPY (2.96 Å)
Cite:CryoEM-enabled visual proteomics reveals de novo structures of oligomeric protein complexes.
Structure, 2025
9N5L
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BU of 9n5l by Molmil
The Red Crowned-Crane Parvovirus Capsid
Descriptor: MAGNESIUM ION, Major capsid protein
Authors:Hsi, J, Mietzsch, M, McKenna, R.
Deposit date:2025-02-04
Release date:2025-07-02
Last modified:2025-07-30
Method:ELECTRON MICROSCOPY (2.66 Å)
Cite:Birds of a feather flock together: structural characterization of red-crowned crane and turkey aveparvoviruses.
J.Virol., 99, 2025
9N5M
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BU of 9n5m by Molmil
The Turkey Parvovirus Capsid structure
Descriptor: MAGNESIUM ION, VP2
Authors:Hsi, J, Mietzsch, M, McKenna, R.
Deposit date:2025-02-04
Release date:2025-07-02
Last modified:2025-07-30
Method:ELECTRON MICROSCOPY (2.35 Å)
Cite:Birds of a feather flock together: structural characterization of red-crowned crane and turkey aveparvoviruses.
J.Virol., 99, 2025
9N67
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Crystal structure of dihydroorotate dehydrogenase from Leishmania braziliensis in complex with orotate
Descriptor: Dihydroorotate dehydrogenase, FLAVIN MONONUCLEOTIDE, GLYCEROL, ...
Authors:Froes, T.Q, Vaidergorn, M.M, Emery, F.S, Nonato, M.C.
Deposit date:2025-02-05
Release date:2025-07-23
Last modified:2025-07-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Barbituric Acid Derivatives as Covalent Inhibitors of Leishmania braziliensis Dihydroorotate Dehydrogenase.
J.Med.Chem., 2025
9N68
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BU of 9n68 by Molmil
Crystal structure of dihydroorotate dehydrogenase from Leishmania brasiliensis in complex with 5-(3-hydroxybenzylidene)pyrimidine-2,4,6(1H,3H,5H)-trione
Descriptor: 5-[(3-hydroxyphenyl)methyl]-1,3-diazinane-2,4,6-trione, Dihydroorotate dehydrogenase, FLAVIN MONONUCLEOTIDE, ...
Authors:Froes, T.Q, Vaidergorn, M.M, dos Santos, T, Leite, P.I.P.L, Godoi, B.F, Emery, F.S, Nonato, M.C.
Deposit date:2025-02-05
Release date:2025-07-23
Last modified:2025-07-30
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Barbituric Acid Derivatives as Covalent Inhibitors of Leishmania braziliensis Dihydroorotate Dehydrogenase.
J.Med.Chem., 2025
9N6O
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BU of 9n6o by Molmil
Crystal structure of dihydroorotate dehydrogenase from Leishmania braziliensis in complex with 5-(4-hydroxy-3-methoxybenzyl)pyrimidine-2,4,6(1H,3H,5H)-trione
Descriptor: 5-[(4-hydroxy-3-methoxyphenyl)methyl]-1,3-diazinane-2,4,6-trione, Dihydroorotate dehydrogenase, FLAVIN MONONUCLEOTIDE, ...
Authors:Froes, T.Q, Vaidergorn, M.M, Leite, P.I.P.L, Godoi, B.F, dos Santos, T, Emery, F.S, Nonato, M.C.
Deposit date:2025-02-05
Release date:2025-07-23
Last modified:2025-07-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Barbituric Acid Derivatives as Covalent Inhibitors of Leishmania braziliensis Dihydroorotate Dehydrogenase.
J.Med.Chem., 2025
9N6Q
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BU of 9n6q by Molmil
Crystal structure of dihydroorotate dehydrogenase from Leishmania braziliensis in complex with 5-(4-hydroxy-3-methoxybenzyl)pyrimidine-2,4,6(1H,3H,5H)-trione
Descriptor: 5-ethyl-1,3-diazinane-2,4,6-trione, Dihydroorotate dehydrogenase, FLAVIN MONONUCLEOTIDE, ...
Authors:Froes, T.Q, Vaidergorn, M.M, Leite, P.I.P, Emery, F.S, Nonato, M.C.
Deposit date:2025-02-05
Release date:2025-07-23
Last modified:2025-07-30
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Barbituric Acid Derivatives as Covalent Inhibitors of Leishmania braziliensis Dihydroorotate Dehydrogenase.
J.Med.Chem., 2025
9N81
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BU of 9n81 by Molmil
A gap-filling complex with Pol mu engaged in the NHEJ Pathway
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, DNA (34-MER), DNA (37-MER), ...
Authors:Li, J, Liu, L, Gellert, M, Yang, W.
Deposit date:2025-02-07
Release date:2025-04-23
Last modified:2025-07-30
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Dynamic assemblies and coordinated reactions of non-homologous end joining.
Nature, 643, 2025
9N82
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BU of 9n82 by Molmil
The ligation (AMP-Lys) complex in the NHEJ pathway
Descriptor: ADENOSINE MONOPHOSPHATE, DNA (34-MER), DNA (35-MER), ...
Authors:Li, J, Liu, L, Gellert, M, Yang, W.
Deposit date:2025-02-07
Release date:2025-04-23
Last modified:2025-07-30
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Dynamic assemblies and coordinated reactions of non-homologous end joining.
Nature, 643, 2025
9N83
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BU of 9n83 by Molmil
The ligation complex in the NHEJ pathway
Descriptor: ADENOSINE MONOPHOSPHATE, DNA (34-MER), DNA (35-MER), ...
Authors:Li, J, Liu, L, Gellert, M, Yang, W.
Deposit date:2025-02-07
Release date:2025-04-23
Last modified:2025-07-30
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Dynamic assemblies and coordinated reactions of non-homologous end joining.
Nature, 643, 2025
9NEK
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BU of 9nek by Molmil
Capsid structure of the Syngnathus scovelli chapparvovirus virus-like particle
Descriptor: Putative structural protein VP
Authors:Penzes, J.J, Kaelber, J.T.
Deposit date:2025-02-19
Release date:2025-03-05
Last modified:2025-07-30
Method:ELECTRON MICROSCOPY (2.93 Å)
Cite:Capsid Structure of the Fish Pathogen Syngnathus Scovelli Chapparvovirus Offers a New Perspective on Parvovirus Structural Biology.
Viruses, 17, 2025
9NGF
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BU of 9ngf by Molmil
ELIC facing ECD outwards in liposomes with 2:1:1 POPC:POPE:POPG
Descriptor: Erwinia chrysanthemi ligand-gated ion channel, SODIUM ION
Authors:Dalal, V, Cheng, W.W.L.
Deposit date:2025-02-22
Release date:2025-07-23
Last modified:2025-07-30
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Cryo-EM structures of a pentameric ligand-gated ion channel in liposomes.
Elife, 14, 2025
9NGG
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BU of 9ngg by Molmil
ELIC facing ECD inwards in liposomes with 2:1:1 POPC:POPE:POPG
Descriptor: Erwinia chrysanthemi ligand-gated ion channel, SODIUM ION
Authors:Dalal, V, Cheng, W.W.L.
Deposit date:2025-02-22
Release date:2025-07-23
Last modified:2025-07-30
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Cryo-EM structures of a pentameric ligand-gated ion channel in liposomes.
Elife, 14, 2025
9NGI
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BU of 9ngi by Molmil
ELIC5 with propylamine facing ECD inwards in liposomes with 2:1:1 POPC:POPE:POPG
Descriptor: 3-AMINOPROPANE, Erwinia chrysanthemi ligand-gated ion channel, SODIUM ION
Authors:Dalal, V, Cheng, W.W.L.
Deposit date:2025-02-22
Release date:2025-07-23
Last modified:2025-07-30
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Cryo-EM structures of a pentameric ligand-gated ion channel in liposomes.
Elife, 14, 2025
9NGQ
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BU of 9ngq by Molmil
ELIC state 1 with propylamine facing ECD outwards in liposomes with 2:1:1 POPC:POPE:POPG
Descriptor: 3-AMINOPROPANE, Erwinia chrysanthemi ligand-gated ion channel, SODIUM ION
Authors:Dalal, V, Cheng, W.W.L.
Deposit date:2025-02-22
Release date:2025-07-23
Last modified:2025-07-30
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Cryo-EM structures of a pentameric ligand-gated ion channel in liposomes.
Elife, 14, 2025
9NGR
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BU of 9ngr by Molmil
ELIC state 2 with propylamine facing ECD outwards in liposomes with 2:1:1 POPC:POPE:POPG
Descriptor: 3-AMINOPROPANE, Erwinia chrysanthemi ligand-gated ion channel, SODIUM ION
Authors:Dalal, V, Cheng, W.W.L.
Deposit date:2025-02-22
Release date:2025-07-23
Last modified:2025-07-30
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Cryo-EM structures of a pentameric ligand-gated ion channel in liposomes.
Elife, 14, 2025
9NGS
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BU of 9ngs by Molmil
ELIC with propylamine facing ECD inwards in liposomes with 2:1:1 POPC:POPE:POPG
Descriptor: 3-AMINOPROPANE, Erwinia chrysanthemi ligand-gated ion channel, SODIUM ION
Authors:Dalal, V, Cheng, W.W.L.
Deposit date:2025-02-22
Release date:2025-07-23
Last modified:2025-07-30
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Cryo-EM structures of a pentameric ligand-gated ion channel in liposomes.
Elife, 14, 2025
9NH4
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BU of 9nh4 by Molmil
ELIC with propylamine in spNW25 nanodiscs with 2:1:1 POPC:POPE:POPG
Descriptor: 3-AMINOPROPANE, Erwinia chrysanthemi ligand-gated ion channel
Authors:Dalal, V, Cheng, W.W.L.
Deposit date:2025-02-23
Release date:2025-07-23
Last modified:2025-07-30
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Cryo-EM structures of a pentameric ligand-gated ion channel in liposomes.
Elife, 14, 2025
9NPX
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BU of 9npx by Molmil
SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosomal subunit (local refinement of the 40S body)
Descriptor: 18S ribosomal RNA, 40S ribosomal protein S11, 40S ribosomal protein S13, ...
Authors:Gen, R, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D.
Deposit date:2025-03-11
Release date:2025-06-11
Last modified:2025-07-30
Method:ELECTRON MICROSCOPY (2.1 Å)
Cite:SARS-CoV-2 nsp1 mediates broad inhibition of translation in mammals.
Cell Rep, 44, 2025
9NPY
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BU of 9npy by Molmil
SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)
Descriptor: 18S ribosomal RNA, 40S ribosomal protein eS10, RPS10, ...
Authors:Gen, R, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D.
Deposit date:2025-03-11
Release date:2025-06-11
Last modified:2025-07-30
Method:ELECTRON MICROSCOPY (2.1 Å)
Cite:SARS-CoV-2 nsp1 mediates broad inhibition of translation in mammals.
Cell Rep, 44, 2025
9NQU
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BU of 9nqu by Molmil
KDM6B-nucleosome structure stabilized by H3K27C-UNC8015 covalent conjugate
Descriptor: DNA (185-MER), FE (III) ION, Histone H2A type 1, ...
Authors:Lin, C.-C, McGinty, R.K.
Deposit date:2025-03-13
Release date:2025-07-23
Last modified:2025-07-30
Method:ELECTRON MICROSCOPY (3.16 Å)
Cite:Structural mechanism of H3K27 demethylation and crosstalk with heterochromatin markers.
Mol.Cell, 2025
9NSV
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BU of 9nsv by Molmil
CryoEM structure of ancestral nitrogenase MoFe-protein
Descriptor: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, FE (III) ION, FE(8)-S(7) CLUSTER, ...
Authors:Shen, Y, Warmack, R.A.
Deposit date:2025-03-17
Release date:2025-07-16
Last modified:2025-07-30
Method:ELECTRON MICROSCOPY (2.19 Å)
Cite:CryoEM-enabled visual proteomics reveals de novo structures of oligomeric protein complexes.
Structure, 2025
9OC4
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BU of 9oc4 by Molmil
High-resolution cryo-EM structure of KdpFABC in the E1P-ADP state in lipid nanodisc
Descriptor: (2R)-3-(((2-aminoethoxy)(hydroxy)phosphoryl)oxy)-2-(palmitoyloxy)propyl (E)-octadec-9-enoate, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Hussein, A.K, Zhang, X, Pedersen, B.P, Stokes, D.L.
Deposit date:2025-04-23
Release date:2025-05-21
Last modified:2025-07-30
Method:ELECTRON MICROSCOPY (2.1 Å)
Cite:Conduction pathway for potassium through the E. coli pump KdpFABC.
Biorxiv, 2025
9ODB
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BU of 9odb by Molmil
Clone 2.1 Fab in complex with chicken IgY CH2 domain (local refinement)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Clone 2.1 Fab heavy chain, Clone 2.1 Fab light chain, ...
Authors:Ozorowski, G, Alkutkar, T, Ward, A.B.
Deposit date:2025-04-26
Release date:2025-06-11
Last modified:2025-07-30
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Replaying germinal center evolution on a quantified affinity landscape.
Biorxiv, 2025

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PDB entries from 2025-07-30

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