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X線構造因子データを含む新しいPDBエントリー
8QMW
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Non-obligately L8S8-complex forming RubisCO derived from ancestral sequence reconstruction and rational engineering in L8S8 complex with substitutions R269W, E271R, L273N
分子名称: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, MAGNESIUM ION, ...
著者Zarzycki, J, Schulz, L, Erb, T.J, Hochberg, G.K.A.
登録日2023-09-25
公開日2024-10-02
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Layered entrenchment maintains essentiality in protein-protein interactions
Embo J., 2024
8QNL
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Structure of the toxin-antitoxin NatRT complex from Pseudomonas aeruginosa
分子名称: Antitoxin Xre/MbcA/ParS-like toxin-binding domain-containing protein, PHOSPHATE ION, RES domain-containing protein
著者Dias Teixeira, R, Hiller, S, Jenal, U.
登録日2023-09-27
公開日2024-10-02
実験手法X-RAY DIFFRACTION (2.27 Å)
主引用文献Toxin-mediated depletion of NAD and NADP drives persister formation in a human pathogen.
Embo J., 2024
8QNQ
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Structure of the toxin-antitoxin NatRT complex from Pseudomonas aeruginosa. NatTE29D mutant
分子名称: Antitoxin Xre/MbcA/ParS-like toxin-binding domain-containing protein, PHOSPHATE ION, RES domain-containing protein
著者Dias Teixeira, R, Hiller, S, Jenal, U.
登録日2023-09-27
公開日2024-10-02
実験手法X-RAY DIFFRACTION (2.386 Å)
主引用文献Toxin-mediated depletion of NAD and NADP drives persister formation in a human pathogen.
Embo J., 2024
8QOC
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Crystal structure of Staphylococcus aureus PLP Synthase (Pdx1)
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, MAGNESIUM ION, ...
著者Ullah, N, Wrenger, C, Betzel, C.
登録日2023-09-28
公開日2024-10-02
実験手法X-RAY DIFFRACTION (2.83 Å)
主引用文献Structure and dynamics of the staphylococcal pyridoxal 5-phosphate synthase complex reveal transient interactions at the enzyme interface.
J.Biol.Chem., 300, 2024
8R1M
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BU of 8r1m by Molmil
Structure of TxGH116 with covalently bound N-azido-octyl aziridine
分子名称: (1R,2R,3R,4S)-4-[8-(azanyldiazenyl)octylamino]-3-(hydroxymethyl)cyclopentane-1,2-diol, CALCIUM ION, CHLORIDE ION, ...
著者Offen, W.A, Davies, G.J.
登録日2023-11-02
公開日2024-10-02
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Selective labelling of GBA2 in cells with fluorescent beta-d-arabinofuranosyl cyclitol aziridines.
Chem Sci, 2024
8R7W
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Kras G12D in complex with compound 3
分子名称: 8-(furan-3-yl)-2,3,4,9-tetrahydropyrido[3,4-b]indol-1-one, GTPase KRas, MAGNESIUM ION, ...
著者Zak, K.M, Kessler, D.
登録日2023-11-27
公開日2024-10-02
実験手法X-RAY DIFFRACTION (1.161 Å)
主引用文献Kras G12D in complex with compound 3
To Be Published
8R7X
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Kras G12D in complex with compound 4
分子名称: 8-pyridin-4-yl-2,3,4,9-tetrahydropyrido[3,4-b]indol-1-one, GTPase KRas, MAGNESIUM ION, ...
著者Kessler, D, Zak, K.M.
登録日2023-11-27
公開日2024-10-02
実験手法X-RAY DIFFRACTION (1.314 Å)
主引用文献Kras G12D in complex with compound 4
To Be Published
8RIU
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BU of 8riu by Molmil
Crystal structure of the F420-reducing carbon monoxide dehydrogenase component from the ethanotroph Candidatus Ethanoperedens thermophilum
分子名称: 1,2-ETHANEDIOL, 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, Acetyl-CoA decarbonylase/synthase complex subunit alpha, ...
著者Lemaire, O.N, Wagner, T.
登録日2023-12-19
公開日2024-10-02
実験手法X-RAY DIFFRACTION (1.89 Å)
主引用文献F420 reduction as a cellular driver for anaerobic ethanotrophy
To Be Published
8RJA
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Crystal structure of the F420-reducing formylmethanofuran dehydrogenase complex from the ethanotroph Candidatus Ethanoperedens thermophilum
分子名称: 1,2-ETHANEDIOL, 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE, 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, ...
著者Lemaire, O.N, Wagner, T.
登録日2023-12-20
公開日2024-10-02
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献F420 reduction as a cellular driver for anaerobic ethanotrophy
To Be Published
8S5F
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Crystal structure of the HExxH domain of ChlBHExxH a novel alpha-ketoglutarate dependent oxygenase
分子名称: ChlH from Chlorogloeopsis sp., PHOSPHATE ION
著者de la Mora, E, Amara, P, Usclat, A, Morishita, Y, Morinaka, B, Nicolet, Y.
登録日2024-02-23
公開日2024-10-02
実験手法X-RAY DIFFRACTION (2.797 Å)
主引用文献Fused radical SAM and alpha KG-HExxH domain proteins contain a distinct structural fold and catalyse cyclophane formation and beta-hydroxylation.
Nat.Chem., 2024
8U9L
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BU of 8u9l by Molmil
Crystal Structure of RelA-cRel chimera complex with DNA
分子名称: DNA (5'-D(P*GP*AP*AP*TP*CP*GP*GP*AP*AP*AP*TP*TP*CP*CP*CP*AP*TP*CP*AP*A)-3'), DNA (5'-D(P*TP*TP*GP*AP*TP*GP*GP*GP*AP*AP*TP*TP*TP*CP*CP*GP*AP*TP*TP*C)-3'), Transcription factor p65,Proto-oncogene c-Rel chimera
著者Chang, A, Wu, Y, Li, S.X, Smale, S, Chen, L.
登録日2023-09-19
公開日2024-10-02
実験手法X-RAY DIFFRACTION (3.091 Å)
主引用文献Crystal Structure of RelA-cRel chimera complex with DNA
To Be Published
8UDS
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BU of 8uds by Molmil
The Crystal Structure of CoxG from M. smegmatis, minus lipid anchoring C-terminus.
分子名称: Carbon monoxide dehydrogenase subunit G (CoxG) family protein
著者Rhys, R, Kropp, A.
登録日2023-09-29
公開日2024-10-02
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structural basis for bacterial energy extraction from atmospheric carbon monoxide
To Be Published
8V4T
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BU of 8v4t by Molmil
The Native DNA 16-mer sequence 5'-GCTGCGTTAACGCAGC-3
分子名称: CALCIUM ION, DNA (5'-D(*GP*CP*TP*GP*CP*GP*TP*TP*AP*AP*CP*GP*CP*AP*GP*C)-3')
著者Terrell, J.R, Wilson, W.D.
登録日2023-11-29
公開日2024-10-02
実験手法X-RAY DIFFRACTION (1.47 Å)
主引用文献Structural Examination of DNA Minor Groove Binding by Diamidine Stacked Dimers
To Be Published
8V9N
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Human PU.1 ETS-Domain (165-270) Bound to d(AATAGAAGGAAGTGGG)
分子名称: DNA (5'-D(*AP*AP*TP*AP*GP*AP*AP*GP*GP*AP*AP*GP*TP*GP*GP*G)-3'), DNA (5'-D(*TP*CP*CP*CP*AP*CP*TP*TP*CP*CP*TP*TP*CP*TP*AP*T)-3'), Transcription factor PU.1
著者Terrell, J.R, Ogbonna, E.N, Poon, G.M.K, Wilson, W.D.
登録日2023-12-08
公開日2024-10-02
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Structural Characterization of GC Base Pair Recognition by a Diamidine Small Molecule
To Be Published
8VIU
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BU of 8viu by Molmil
The DNA 16-mer sequence 5'-GCTGCGTTAACGCAGC-3' bound by a DB1992 stacked dimer
分子名称: (2M)-2-[(5P)-5-(5-carbamimidoylthiophen-2-yl)furan-2-yl]-1H-benzimidazole-6-carboximidamide, CALCIUM ION, DNA (5'-D(*GP*CP*TP*GP*CP*GP*TP*TP*AP*AP*CP*GP*CP*AP*GP*C)-3')
著者Terrell, J.R, Wilson, W.D.
登録日2024-01-05
公開日2024-10-02
実験手法X-RAY DIFFRACTION (1.49 Å)
主引用文献Structural Examination of DNA Minor Groove Binding by Diamidine Stacked Dimers
To Be Published
8VPV
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Class III PreQ1 riboswitch mutant delta84
分子名称: 7-DEAZA-7-AMINOMETHYL-GUANINE, RNA (101-MER)
著者Srivastava, Y, Jenkins, J.L, Wedekind, J.E.
登録日2024-01-17
公開日2024-10-02
実験手法X-RAY DIFFRACTION (3.04 Å)
主引用文献New insights into Class III PreQ1 metabolite binding
To Be Published
8VWX
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BU of 8vwx by Molmil
Human Bcl-2 (G101V Mutant)/Bcl-xL Chimera Fused to Maltose-Binding Protein
分子名称: Maltose/maltodextrin-binding periplasmic protein fused to apoptosis regulator Bcl-2/Bcl-xL chimera
著者Baird, J, Holliday, M.
登録日2024-02-02
公開日2024-10-02
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Complementary Backbone and Side-Chain Analysis of Drug-Protein Interactions: Combining Hydrogen/Deuterium Exchange and Protein Oxidative Footprinting to Discriminate the Binding of Small Molecule Therapeutics
To Be Published
8VWZ
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BU of 8vwz by Molmil
Human Bcl-2 (G101V Mutant)/Bcl-xL Chimera Fused to MBP in Complex with Inhibitor S55746
分子名称: DI(HYDROXYETHYL)ETHER, Maltose/maltodextrin-binding periplasmic protein fused to apoptosis regulator Bcl-2/Bcl-xL chimera, ~{N}-(4-hydroxyphenyl)-3-[6-[[(3~{S})-3-(morpholin-4-ylmethyl)-3,4-dihydro-1~{H}-isoquinolin-2-yl]carbonyl]-1,3-benzodioxol-5-yl]-~{N}-phenyl-5,6,7,8-tetrahydroindolizine-1-carboxamide
著者Baird, J, Holliday, M.
登録日2024-02-02
公開日2024-10-02
実験手法X-RAY DIFFRACTION (2.33 Å)
主引用文献Complementary Backbone and Side-Chain Analysis of Drug-Protein Interactions: Combining Hydrogen/Deuterium Exchange and Protein Oxidative Footprinting to Discriminate the Binding of Small Molecule Therapeutics
To Be Published
8VXM
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BU of 8vxm by Molmil
Human Bcl-2/Bcl-xL Chimera Fused to MBP in Complex with Inhibitor S55746
分子名称: DI(HYDROXYETHYL)ETHER, Maltose/maltodextrin-binding periplasmic protein fused to apoptosis regulator Bcl-2/Bcl-xL chimera, ~{N}-(4-hydroxyphenyl)-3-[6-[[(3~{S})-3-(morpholin-4-ylmethyl)-3,4-dihydro-1~{H}-isoquinolin-2-yl]carbonyl]-1,3-benzodioxol-5-yl]-~{N}-phenyl-5,6,7,8-tetrahydroindolizine-1-carboxamide
著者Baird, J, Holliday, M.
登録日2024-02-05
公開日2024-10-02
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Complementary Backbone and Side-Chain Analysis of Drug-Protein Interactions: Combining Hydrogen/Deuterium Exchange and Protein Oxidative Footprinting to Discriminate the Binding of Small Molecule Therapeutics
To Be Published
8VXN
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BU of 8vxn by Molmil
Human Bcl-2/Bcl-xL Chimera Fused to Maltose-Binding Protein
分子名称: Maltose/maltodextrin-binding periplasmic protein fused to apoptosis regulator Bcl-2/Bcl-xL chimera
著者Baird, J, Holliday, M.
登録日2024-02-05
公開日2024-10-02
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Complementary Backbone and Side-Chain Analysis of Drug-Protein Interactions: Combining Hydrogen/Deuterium Exchange and Protein Oxidative Footprinting to Discriminate the Binding of Small Molecule Therapeutics
To Be Published
8VZA
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BU of 8vza by Molmil
Crystal Structure of 2-Hydroxacyl-CoA Lyase/Synthase ApbHACS from Alphaproteobacteria bacterium in the Complex with THDP, L-Lactyl-CoA, and ADP
分子名称: 2-Hydroxyacyl-CoA lyase/Synthase, 2-[(2R)-3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-2-oxidanyl-2H-1,3-thiazol-5-yl]ethyl phosphono hydrogen phosphate, ACETYL GROUP, ...
著者Gade, P, Kim, Y, Endres, M, Lee, S, Yoshikuni, Y, Gonzalez, R, Michalska, K, Joachimiak, A.
登録日2024-02-11
公開日2024-10-02
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Revealing reaction intermediates in one-carbon elongation by thiamine diphosphate/CoA-dependent enzyme family.
Commun Chem, 7, 2024
8VZB
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Crystal Structure of 2-Hydroxacyl-CoA Lyase/Synthase ApbHACS from Alphaproteobacteria bacterium in the Complex with THDP, D-Lactyl-CoA, and ADP
分子名称: 1,2-ETHANEDIOL, 2-[(2R)-3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-2-oxidanyl-2H-1,3-thiazol-5-yl]ethyl phosphono hydrogen phosphate, ACETIC ACID, ...
著者Gade, P, Kim, Y, Endres, M, Lee, S, Yoshikuni, Y, Gonzalez, R, Michalska, K, Joachimiak, A.
登録日2024-02-11
公開日2024-10-02
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献Revealing reaction intermediates in one-carbon elongation by thiamine diphosphate/CoA-dependent enzyme family.
Commun Chem, 7, 2024
8VZC
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Crystal Structure of 2-Hydroxyacyl-CoA Lyase/Synthse ApbHACS from Alphaproteobacteria bacterium in the Complex with THDP, Formyl-CoA, and ADP
分子名称: 1,2-ETHANEDIOL, 3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-2-(hydroxymethyl)-5-(2-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3-thiazol-3-ium, ADENOSINE-5'-DIPHOSPHATE, ...
著者Gade, P, Kim, Y, Endres, M, Lee, S, Yoshikuni, Y, Gonzalez, R, Michalska, K, Joachimiak, A.
登録日2024-02-11
公開日2024-10-02
実験手法X-RAY DIFFRACTION (1.72 Å)
主引用文献Revealing reaction intermediates in one-carbon elongation by thiamine diphosphate/CoA-dependent enzyme family.
Commun Chem, 7, 2024
8VZD
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Crystal Structure of 2-Hydroxyacyl-CoA lyase/synthase TbHACS from Thermoflexaceae bacterium in the Complex with THDP, Formyl-CoA and ADP
分子名称: 1,2-ETHANEDIOL, 2-Hydroxyacyl-CoA Lyase/Synthase TbHACS, ADENOSINE-5'-DIPHOSPHATE, ...
著者Kim, Y, Maltseva, M, Endres, M, Lee, S, Yoshikuni, Y, Gonzalez, R, Michalska, K, Joachimiak, A.
登録日2024-02-11
公開日2024-10-02
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Revealing reaction intermediates in one-carbon elongation by thiamine diphosphate/CoA-dependent enzyme family.
Commun Chem, 7, 2024
8VZE
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Crystal Structure of 2-Hydroxyacyl-CoA lyase/synthase TbHACS from Thermoflexaceae bacterium in the Complex with THDP, 2-Hydroxyisobutyryl-CoA and ADP
分子名称: 1,2-ETHANEDIOL, 3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-2-(hydroxymethyl)-5-(2-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3-thiazol-3-ium, ADENOSINE-5'-DIPHOSPHATE, ...
著者Kim, Y, Maltseva, M, Endres, M, Lee, S, Yoshikuni, Y, Gonzalez, R, Michalska, K, Joachimiak, A.
登録日2024-02-11
公開日2024-10-02
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献Revealing reaction intermediates in one-carbon elongation by thiamine diphosphate/CoA-dependent enzyme family.
Commun Chem, 7, 2024

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