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NMR 拘束データを含む全ての PDB エントリー
1Y8D
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Dimeric parallel-stranded tetraplex with 3+1 5' G-tetrad interface, single-residue chain reversal loops and GAG triad in the context of A(GGGG) pentad
分子名称: 5'-D(*GP*GP*GP*GP*TP*GP*GP*GP*AP*GP*GP*AP*GP*GP*GP*T)-3'
著者Phan, A.T, Kuryavyi, V.V, Ma, J.-B, Faure, A, Andreola, M.-L, Patel, D.J.
登録日2004-12-11
公開日2005-02-01
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献An interlocked dimeric parallel-stranded DNA quadruplex: A potent inhibitor of HIV-1 integrase
Proc.Natl.Acad.Sci.USA, 102, 2005
1Y8F
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Solution structure of the munc13-1 C1-domain
分子名称: Unc-13 homolog A, ZINC ION
著者Shen, N, Guryev, O, Rizo, J.
登録日2004-12-12
公開日2005-04-12
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Intramolecular occlusion of the diacylglycerol-binding site in the C1 domain of munc13-1.
Biochemistry, 44, 2005
1Y8M
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Solution Structure of Yeast Mitochondria Fission Protein Fis1
分子名称: Fis1
著者Suzuki, M, Youle, R.J, Tjandra, N.
登録日2004-12-13
公開日2005-04-05
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Novel structure of the N terminus in yeast Fis1 correlates with a specialized function in mitochondrial fission.
J.Biol.Chem., 280, 2005
1Y9H
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Methylation of cytosine at C5 in a CpG sequence context causes a conformational switch of a benzo[a]pyrene diol epoxide-N2-guanine adduct in DNA from a minor groove alignment to intercalation with base displacement
分子名称: 1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE, 5'-D(*CP*CP*AP*TP*(5CM)P*(BPG)P*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*CP*GP*AP*TP*GP*G)-3'
著者Zhang, N, Lin, C, Huang, X, Kolbanovskiy, A, Hingerty, B.E, Amin, S, Broyde, S, Geacintov, N.E, Patel, D.J.
登録日2004-12-15
公開日2005-03-22
最終更新日2024-04-24
実験手法SOLUTION NMR
主引用文献Methylation of cytosine at C5 in a CpG sequence context causes a conformational switch of a benzo[a]pyrene diol epoxide-N2-guanine adduct in DNA from a minor groove alignment to intercalation with base displacement.
J.Mol.Biol., 346, 2005
1Y9J
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Solution structure of the rat Sly1 N-terminal domain
分子名称: Sec1 family domain containing protein 1
著者Arac, D, Dulubova, I, Pei, J, Huryeva, I, Grishin, N.V, Rizo, J.
登録日2004-12-15
公開日2005-02-15
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Three-dimensional Structure of the rSly1 N-terminal Domain Reveals a Conformational Change Induced by Binding to Syntaxin 5.
J.Mol.Biol., 346, 2005
1Y9O
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1H NMR Structure of Acylphosphatase from the hyperthermophile Sulfolobus Solfataricus
分子名称: Acylphosphatase
著者Corazza, A, Rosano, C, Pagano, K, Alverdi, V, Esposito, G, Capanni, C, Bemporad, F, Plakoutsi, G, Stefani, M, Chiti, F, Zuccotti, S, Bolognesi, M, Viglino, P.
登録日2004-12-16
公開日2005-11-29
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structure, conformational stability, and enzymatic properties of acylphosphatase from the hyperthermophile Sulfolobus solfataricus
Proteins, 62, 2006
1Y9X
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Solution structure of Archaeon DNA-binding protein ssh10b
分子名称: DNA/RNA-binding protein Alba 1
著者Cui, Q, Tong, Y, Wang, J.
登録日2004-12-16
公開日2005-06-21
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献A stabilizing alpha/beta-hydrophobic core greatly contributes to hyperthermostability of archaeal [P62A]Ssh10b.
Biochemistry, 47, 2008
1YBL
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NMR structure of the i-motif tetramer of d(AACCCC)
分子名称: 5'-D(*AP*AP*CP*CP*CP*C)-3'
著者Esmaili, N, Leroy, J.-L.
登録日2004-12-21
公開日2005-01-11
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献i-motif solution structure and dynamics of the d(AACCCC) and d(CCCCAA) tetrahymena telomeric repeats
Nucleic Acids Res., 33, 2005
1YBR
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Solution structure of the 5'E topology of the i-motif tetramer of d(CCCCAA)
分子名称: 5'-D(*CP*CP*CP*CP*AP*A)-3'
著者Esmaili, N, Leroy, J.-L.
登録日2004-12-21
公開日2005-01-11
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献i-motif solution structure and dynamics of the d(AACCCC) and d(CCCCAA) tetrahymena telomeric repeats
Nucleic Acids Res., 33, 2005
1YCM
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Solution Structure of matrix metalloproteinase 12 (MMP12) in the presence of N-Isobutyl-N-[4-methoxyphenylsulfonyl]glycyl hydroxamic acid (NNGH)
分子名称: CALCIUM ION, Macrophage metalloelastase, N-ISOBUTYL-N-[4-METHOXYPHENYLSULFONYL]GLYCYL HYDROXAMIC ACID, ...
著者Bertini, I, Calderone, V, Cosenza, M, Fragai, M, Lee, Y.M, Luchinat, C, Mangani, S, Terni, B, Turano, P, Structural Proteomics in Europe (SPINE)
登録日2004-12-22
公開日2005-04-19
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Conformational variability of matrix metalloproteinases: Beyond a single 3D structure.
Proc.Natl.Acad.Sci.Usa, 102, 2005
1YCT
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Clustered abasic lesions in dna: nmr solution structure of clustered bistranded +1 abasic lesion
分子名称: 5'-D(*CP*GP*CP*AP*TP*GP*(3DR)P*GP*TP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*TP*AP*(3DR)P*CP*CP*AP*TP*GP*CP*G)-3'
著者Hazel, R.D, de los Santos, C.
登録日2004-12-23
公開日2006-01-10
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献NMR solution structures of bistranded abasic site lesions in DNA.
Biochemistry, 47, 2008
1YCW
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Clustered abasic lesions in dna: nmr solution structures of clustered bistranded-1 abasic lesion
分子名称: 5'-D(*CP*GP*CP*AP*TP*GP*(3DR)P*GP*TP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*TP*AP*CP*CP*(3DR)P*AP*TP*GP*CP*G)-3'
著者Hazel, R.D, de los Santos, C.
登録日2004-12-23
公開日2005-12-06
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献NMR solution structures of bistranded abasic site lesions in DNA.
Biochemistry, 47, 2008
1YDU
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Solution NMR structure of At5g01610, an Arabidopsis thaliana protein containing DUF538 domain
分子名称: At5g01610
著者Zhao, Q, Cornilescu, C.C, Lee, M.S, Markley, J.L, Center for Eukaryotic Structural Genomics (CESG)
登録日2004-12-26
公開日2005-02-15
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution NMR structure of At5g01610, an Arabidopsis thaliana protein containing DUF538 domain
To be Published
1YEL
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Structure of the hypothetical Arabidopsis thaliana protein At1g16640.1
分子名称: At1g16640
著者Peterson, F.C, Waltner, J.K, Lytle, B.L, Volkman, B.F, Center for Eukaryotic Structural Genomics (CESG)
登録日2004-12-28
公開日2005-01-18
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structure of the B3 domain from Arabidopsis thaliana protein At1g16640
Protein Sci., 14, 2005
1YEZ
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Solution structure of the conserved protein from the gene locus MM1357 of Methanosarcina mazei. Northeast Structural Genomics target MaR30.
分子名称: MM1357
著者Rossi, P, Aramini, J.M, Swapna, G.V.T, Huang, Y.P, Xiao, R, Ho, C.K, Ma, L.C, Acton, T.B, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
登録日2004-12-29
公開日2005-02-22
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution structure of the conserved protein from the gene locus MM1357 of Methanosarcina mazei. Northeast Structural Genomics target MaR30.
To be Published
1YFB
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The solution structure of the N-domain of the transcription factor abrB
分子名称: Transition state regulatory protein abrB
著者Truffault, V, Djuranovic, S, Coles, M.
登録日2004-12-31
公開日2005-04-12
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献AbrB-like transcription factors assume a swapped hairpin fold that is evolutionarily related to double-psi beta barrels.
Structure, 13, 2005
1YG0
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Solution structure of apo-CopP from Helicobacter pylori
分子名称: COP associated protein
著者Lee, B.J, Park, S.J.
登録日2005-01-04
公開日2006-01-24
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution structure of apo-CopP from Helicobacter pylori
To be published
1YG3
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Solution Structure of the ScYLV P1-P2 Frameshifting Pseudoknot, 20 Lowest Energy Structures
分子名称: ScYLV RNA pseudoknot
著者Cornish, P.V, Hennig, M, Giedroc, D.P.
登録日2005-01-04
公開日2005-12-13
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献A loop 2 cytidine-stem 1 minor groove interaction as a positive determinant for pseudoknot-stimulated -1 ribosomal frameshifting
Proc.Natl.Acad.Sci.USA, 102, 2005
1YG4
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Solution Structure of the ScYLV P1-P2 Frameshifting Pseudoknot, Regularized Average Structure
分子名称: ScYLV RNA pseudoknot
著者Cornish, P.V, Hennig, M, Giedroc, D.P.
登録日2005-01-04
公開日2005-12-13
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献A loop 2 cytidine-stem 1 minor groove interaction as a positive determinant for pseudoknot-stimulated -1 ribosomal frameshifting
Proc.Natl.Acad.Sci.USA, 102, 2005
1YGW
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NMR STRUCTURE OF RIBONUCLEASE T1, 34 STRUCTURES
分子名称: RIBONUCLEASE T1
著者Pfeiffer, S, Karimi-Nejad, Y, Ruterjans, H.
登録日1996-09-28
公開日1997-10-08
最終更新日2017-11-29
実験手法SOLUTION NMR
主引用文献Limits of NMR structure determination using variable target function calculations: ribonuclease T1, a case study.
J.Mol.Biol., 266, 1997
1YH5
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Solution NMR Structure of Protein yggU from Escherichia coli. Northeast Structural Genomics Consortium Target ER14.
分子名称: ORF, HYPOTHETICAL PROTEIN
著者Aramini, J.M, Xiao, R, Huang, Y.J, Acton, T.B, Wu, M.J, Mills, J.L, Tejero, R.T, Szyperski, T, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
登録日2005-01-06
公開日2005-02-01
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution Structure of the Hypothetical Protein Yggu from E. Coli. Northeast Structural Genomics Consortium Target Er14.
To be Published
1YHD
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The solution structure of YGGX from Escherichia Coli
分子名称: UPF0269 protein yggX
著者Osborne, M.J, Siddiqui, N, Landgraf, D, Pomposiello, P.J, Gehring, K.
登録日2005-01-07
公開日2005-01-18
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献The solution structure of the oxidative stress-related protein YggX from Escherichia coli.
Protein Sci., 14, 2005
1YHO
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Solution structure of human dihydrofolate reductase complexed with trimethoprim and nadph, 25 structures
分子名称: 2,4-DIAMINO-5-(3,4,5-TRIMETHOXY-BENZYL)-PYRIMIDIN-1-IUM, Dihydrofolate reductase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Polshakov, V.I, Birdsall, B.
登録日2005-01-10
公開日2005-11-22
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution structure of human dihydrofolate reductase in its complex with trimethoprim and NADPH.
J.Biomol.Nmr, 33, 2005
1YHP
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Solution Structure of Ca2+-free DdCAD-1
分子名称: Calcium-dependent cell adhesion molecule-1
著者Lin, Z, Huang, H.B, Siu, C.H, Yang, D.W.
登録日2005-01-10
公開日2006-01-31
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structures of the adhesion molecule DdCAD-1 reveal new insights into Ca(2+)-dependent cell-cell adhesion
Nat.Struct.Mol.Biol., 13, 2006
1YJI
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RDC-refined Solution NMR structure of reduced putidaredoxin
分子名称: FE2/S2 (INORGANIC) CLUSTER, Putidaredoxin
著者Jain, N.U, Tjioe, E, Savidor, A, Boulie, J.
登録日2005-01-14
公開日2005-06-28
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Redox-dependent structural differences in putidaredoxin derived from homologous structure refinement via residual dipolar couplings.
Biochemistry, 44, 2005

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