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9PH4
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BU of 9ph4 by Molmil
Cryo-EM structure of COP9 signalosome in complex with CSN5i-1a
Descriptor: 6-[(4R,5S,6S)-6-hydroxy-6,7,8,9-tetrahydro-5H-imidazo[1,5-a]azepin-5-yl][1,1'-biphenyl]-3-carbonitrile, COP9 signalosome complex subunit 1, COP9 signalosome complex subunit 2, ...
Authors:Shi, H, Zheng, N.
Deposit date:2025-07-08
Release date:2025-12-03
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Cryo-EM structure of COP9 signalosome in complex with CSN5i-1a
To Be Published
9PHL
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BU of 9phl by Molmil
[A4J-A] Asymmetric tensegrity triangle containing a semi-junction formed via in crystallo hybridization
Descriptor: DNA (5'-D(*AP*AP*CP*CP*TP*AP*CP*CP*TP*GP*GP*CP*AP*GP*GP*AP*CP*GP*AP*CP*T)-3'), DNA (5'-D(*CP*AP*GP*AP*TP*AP*CP*CP*TP*GP*AP*TP*CP*GP*GP*AP*CP*TP*AP*CP*G)-3'), DNA (5'-D(*GP*AP*GP*CP*GP*AP*CP*CP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*TP*CP*A)-3'), ...
Authors:Horvath, A, Wang, M, Woloszyn, K, Vecchioni, S, Ohayon, Y.P, Sha, R.
Deposit date:2025-07-09
Release date:2025-12-03
Method:X-RAY DIFFRACTION (6.25 Å)
Cite:Single Stranded Regions in Tensegrity Triangles
To Be Published
9PMD
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BU of 9pmd by Molmil
Human OCTN2 in an inward-facing conformation
Descriptor: Organic cation/carnitine transporter 2, SODIUM ION
Authors:Davies, J.S, Zeng, Y.Z, Stewart, A.G.
Deposit date:2025-07-17
Release date:2025-12-03
Method:ELECTRON MICROSCOPY (2.99 Å)
Cite:Structural basis of sodium ion-dependent carnitine transport by OCTN2
To Be Published
9PWO
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BU of 9pwo by Molmil
Pig Ryanodine Receptor 1 R615C Mutant: Atorvastatin Bound Open Conformation
Descriptor: 7-[2-(4-FLUORO-PHENYL)-5-ISOPROPYL-3-PHENYL-4-PHENYLCARBAMOYL-PYRROL-1-YL]- 3,5-DIHYDROXY-HEPTANOIC ACID, CAFFEINE, CALCIUM ION, ...
Authors:Molinarolo, S.M, Van Petegem, F.
Deposit date:2025-08-04
Release date:2025-12-03
Method:ELECTRON MICROSCOPY (3.36 Å)
Cite:Cryo-electron microscopy reveals sequential binding and activation of Ryanodine Receptors by statin triplets.
Nat Commun, 2025
9PZ5
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BU of 9pz5 by Molmil
Native anti-NANP Fab
Descriptor: IgG heavy chain, IgG lambda light chain
Authors:Young, T.
Deposit date:2025-08-08
Release date:2025-12-03
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Single-residue engineering of lambda ( lambda ) antibody light chains reduces conformational flexibility and enhances thermal stability.
Comput Struct Biotechnol J, 27, 2025
9PZ6
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BU of 9pz6 by Molmil
Anti-NANP Fab with G112T light chain mutation
Descriptor: DI(HYDROXYETHYL)ETHER, IgG heavy chain, IgG light chain, ...
Authors:Young, T.
Deposit date:2025-08-08
Release date:2025-12-03
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Single-residue engineering of lambda ( lambda ) antibody light chains reduces conformational flexibility and enhances thermal stability.
Comput Struct Biotechnol J, 27, 2025
9Q0P
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BU of 9q0p by Molmil
Human anti-EBV gH/gL Fab (AMMO1) with G111T light chain mutation
Descriptor: GLYCEROL, IgG heavy chain, IgG lambda light chain
Authors:Young, T.
Deposit date:2025-08-13
Release date:2025-12-03
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Single-residue engineering of lambda ( lambda ) antibody light chains reduces conformational flexibility and enhances thermal stability.
Comput Struct Biotechnol J, 27, 2025
9Q5J
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BU of 9q5j by Molmil
[12-5B G|A] 12 bp tensegrity triangle that propagates via blunt-end stacking with G stacking on A at the interface
Descriptor: DNA (5'-D(P*AP*GP*GP*AP*CP*TP*A)-3'), DNA (5'-D(P*CP*AP*CP*CP*T)-3'), DNA (5'-D(P*GP*TP*CP*TP*G)-3'), ...
Authors:Horvath, A, Woloszyn, K, Vecchioni, S, Ohayon, Y.P, Sha, R.
Deposit date:2025-08-20
Release date:2025-12-03
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Blunt-End Tensegrity Triangles
To Be Published
9Q8Z
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BU of 9q8z by Molmil
Human chondroitin sulfate polymerase complex CHSY3-CHPF
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Chondroitin sulfate synthase 2, Chondroitin sulfate synthase 3, ...
Authors:Dutta, P, Cordeiro, R.L, Wild, R.
Deposit date:2025-02-25
Release date:2025-12-03
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural basis for human chondroitin sulfate chain polymerization
Nat Commun, 2025
9QD7
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BU of 9qd7 by Molmil
The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog 15a
Descriptor: (2~{S},9~{S})-2-cyclohexyl-19,22-dimethoxy-11,14,17-trioxa-4-azatricyclo[16.2.2.0^{4,9}]docosa-1(21),18(22),19-triene-3,10-dione, Peptidyl-prolyl cis-trans isomerase FKBP5
Authors:Meyners, C, Brudy, C, Hausch, F.
Deposit date:2025-03-06
Release date:2025-12-03
Method:X-RAY DIFFRACTION (2.264 Å)
Cite:Linker Modification Enables Control of Key Functional Group Orientation in Macrocycles.
J.Med.Chem., 2025
9QD8
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BU of 9qd8 by Molmil
The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog 29a
Descriptor: (2~{S},9~{S},12~{S})-2-cyclohexyl-19,22-dimethoxy-12-methyl-11,14,17-trioxa-4-azatricyclo[16.2.2.0^{4,9}]docosa-1(21),18(22),19-triene-3,10-dione, Peptidyl-prolyl cis-trans isomerase FKBP5
Authors:Meyners, C, Brudy, C, Hausch, F.
Deposit date:2025-03-06
Release date:2025-12-03
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Linker Modification Enables Control of Key Functional Group Orientation in Macrocycles.
J.Med.Chem., 2025
9QD9
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BU of 9qd9 by Molmil
The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog 29c
Descriptor: (2~{S},9~{S},12~{S})-2-cyclohexyl-20,23-dimethoxy-12-methyl-11,14,18-trioxa-4-azatricyclo[17.2.2.0^{4,9}]tricosa-1(22),19(23),20-triene-3,10-dione, Peptidyl-prolyl cis-trans isomerase FKBP5
Authors:Meyners, C, Brudy, C, Hausch, F.
Deposit date:2025-03-06
Release date:2025-12-03
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Linker Modification Enables Control of Key Functional Group Orientation in Macrocycles.
J.Med.Chem., 2025
9QDA
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BU of 9qda by Molmil
The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog 29b
Descriptor: (2~{S},9~{S},12~{R})-2-cyclohexyl-19,22-dimethoxy-12-methyl-11,14,17-trioxa-4-azatricyclo[16.2.2.0^{4,9}]docosa-1(21),18(22),19-triene-3,10-dione, Peptidyl-prolyl cis-trans isomerase FKBP5
Authors:Meyners, C, Brudy, C, Hausch, F.
Deposit date:2025-03-06
Release date:2025-12-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Linker Modification Enables Control of Key Functional Group Orientation in Macrocycles.
J.Med.Chem., 2025
9QDB
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BU of 9qdb by Molmil
The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog 29d
Descriptor: (2~{S},9~{S},12~{R})-2-cyclohexyl-20,23-dimethoxy-12-methyl-11,14,18-trioxa-4-azatricyclo[17.2.2.0^{4,9}]tricosa-1(22),19(23),20-triene-3,10-dione, Peptidyl-prolyl cis-trans isomerase FKBP5
Authors:Meyners, C, Brudy, C, Hausch, F.
Deposit date:2025-03-06
Release date:2025-12-03
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Linker Modification Enables Control of Key Functional Group Orientation in Macrocycles.
J.Med.Chem., 2025
9QFI
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BU of 9qfi by Molmil
Crystal structure of YTHDF2 in complex with compound 6 (AI-DF2-47)
Descriptor: 3-methyl-1~{H}-pyrazolo[3,4-d]pyrimidin-4-amine, CHLORIDE ION, GLYCEROL, ...
Authors:Nai, F, Invernizzi, A, Caflisch, A.
Deposit date:2025-03-11
Release date:2025-12-03
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Discovery of YTHDF2 Ligands by Fragment-Based Design.
Acs Bio Med Chem Au, 5, 2025
9QGZ
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BU of 9qgz by Molmil
Crystal structure of a D-lactate dehydrogenase from Porcellio dilatatus
Descriptor: FE (III) ION, FLAVIN-ADENINE DINUCLEOTIDE, Glycolate oxidase
Authors:Borges, P.T, Frazao, C, Martins, L.O.
Deposit date:2025-03-14
Release date:2025-12-03
Method:X-RAY DIFFRACTION (2.84 Å)
Cite:Shotgun metagenomic mining reveals a new FAD-dependent D-lactate dehydrogenase in an isopod gut microbiome.
Appl.Environ.Microbiol., 2025
9QIT
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BU of 9qit by Molmil
Crystal structure of a D-lactate dehydrogenase in complex with D-lactate from Porcellio dilatatus
Descriptor: FE (III) ION, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Borges, P.T, Frazao, C, Martins, L.O.
Deposit date:2025-03-17
Release date:2025-12-03
Method:X-RAY DIFFRACTION (3.04 Å)
Cite:Shotgun metagenomic mining reveals a new FAD-dependent D-lactate dehydrogenase in an isopod gut microbiome.
Appl.Environ.Microbiol., 2025
9QN8
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BU of 9qn8 by Molmil
RAD51 filament in complex with calcium and ATP bound by the RAD51AP1 C-terminus
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA, ...
Authors:Kuhlen, L, Zhang, X.
Deposit date:2025-03-24
Release date:2025-12-03
Method:ELECTRON MICROSCOPY (3.14 Å)
Cite:RAD51AP1 is a versatile RAD51 modulator
To Be Published
9QNA
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BU of 9qna by Molmil
RAD51 filament in complex with magnesium and ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, DNA, DNA repair protein RAD51 homolog 1, ...
Authors:Kuhlen, L, Zhang, X.
Deposit date:2025-03-24
Release date:2025-12-03
Method:ELECTRON MICROSCOPY (3.26 Å)
Cite:RAD51AP1 is a versatile RAD51 modulator
To Be Published
9QNB
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BU of 9qnb by Molmil
RAD51 filament in complex with magnesium and ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA repair protein RAD51 homolog 1, MAGNESIUM ION, ...
Authors:Kuhlen, L, Zhang, X.
Deposit date:2025-03-24
Release date:2025-12-03
Method:ELECTRON MICROSCOPY (3.63 Å)
Cite:RAD51AP1 is a versatile RAD51 modulator
To Be Published
9QNC
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BU of 9qnc by Molmil
RAD51 filament in complex with magnesium and ATP bound by the RAD51AP1 C-terminus
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, DNA, DNA repair protein RAD51 homolog 1, ...
Authors:Kuhlen, L, Zhang, X.
Deposit date:2025-03-24
Release date:2025-12-03
Method:ELECTRON MICROSCOPY (2.98 Å)
Cite:RAD51AP1 is a versatile RAD51 modulator
To Be Published
9QR4
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BU of 9qr4 by Molmil
InlB392_T336Y: T336Y variant of Listeria monocytogenes InlB (internalin B) residues 36-392
Descriptor: GLYCEROL, Internalin B
Authors:Geerds, C, Niemann, H.H.
Deposit date:2025-04-03
Release date:2025-12-03
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Single mutations to tyrosine or glutamate improve crystallizability and crystal diffraction properties of a flexible two-domain protein
Acta Crystallogr.,Sect.F, 2025
9QS9
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BU of 9qs9 by Molmil
Structure and mechanism of the broad spectrum CRISPR-associated ring nuclease Crn4
Descriptor: Crn4 H15A, Cyclic polyA, MAGNESIUM ION
Authors:McMahon, S.A, Chi, H, Hoikkala, V, Gloster, T.M, White, M.F.
Deposit date:2025-04-04
Release date:2025-12-03
Method:X-RAY DIFFRACTION (1.441 Å)
Cite:Structure and mechanism of the broad spectrum CRISPR-associated ring nuclease Crn4
To Be Published
9QUX
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BU of 9qux by Molmil
Solution structure of the Homer1 EVH1 domain
Descriptor: Homer protein homolog 1
Authors:Czajlik, A, Maruzs, B, Fanni, F, Batta, G, Gaspari, Z, Peterfia, B.F.
Deposit date:2025-04-11
Release date:2025-12-03
Method:SOLUTION NMR
Cite:Structural Modeling and Dynamics of the Full-Length Homer1 Multimer.
Proteins, 2025
9QWN
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BU of 9qwn by Molmil
Human UPF1 in complex with the histone stem loop RNA
Descriptor: Isoform 2 of Regulator of nonsense transcripts 1, RNA stem loop, ZINC ION
Authors:Machado de Amorim, A, Loll, B, Hilal, T, Chakrabarti, S.
Deposit date:2025-04-14
Release date:2025-12-03
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Human UPF1 in complex with the histone stem loop RNA
To Be Published

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PDB entries from 2025-12-03

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