Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
New PDB entries
9OL7
DownloadVisualize
BU of 9ol7 by Molmil
Backbone-modified parallel beta hairpin (PBH): wild-type
Descriptor: (ACE)KNVLYRR peptide, (ACE)SKTFIQV(DPR)(4G6) peptide
Authors:Starnes, S.K, Horne, W.S, Del Valle, J.R.
Deposit date:2025-05-12
Release date:2025-12-03
Method:SOLUTION NMR
Cite:Impact of Strand Edge N-Amination on the Stability of a Parallel beta-Hairpin Fold.
J.Org.Chem., 2025
9OL8
DownloadVisualize
BU of 9ol8 by Molmil
Backbone-modified parallel beta hairpin (PBH): N-alpha-amino Arginine at position 17
Descriptor: (ACE)KNVLYR(A1CCS) peptide, (ACE)SKTFIQV(DPR)(4G6) peptide
Authors:Starnes, S.K, Horne, W.S, Del Valle, J.R.
Deposit date:2025-05-12
Release date:2025-12-03
Method:SOLUTION NMR
Cite:Impact of Strand Edge N-Amination on the Stability of a Parallel beta-Hairpin Fold.
J.Org.Chem., 2025
9OL9
DownloadVisualize
BU of 9ol9 by Molmil
Backbone-modified parallel beta hairpin (PBH): N-alpha-amino Phenylalanine at position 4
Descriptor: (ACE)KNVLYRR peptide, (ACE)SKT(A1CCR)IQV(DPR)(4G6) peptide
Authors:Starnes, S.K, Horne, W.S, Del Valle, J.R.
Deposit date:2025-05-12
Release date:2025-12-03
Method:SOLUTION NMR
Cite:Impact of Strand Edge N-Amination on the Stability of a Parallel beta-Hairpin Fold.
J.Org.Chem., 2025
9OLA
DownloadVisualize
BU of 9ola by Molmil
Backbone-modified parallel beta hairpin (PBH): N-alpha-amino Tyrosine at position 15
Descriptor: (ACE)KNVL(A1CCQ)RR peptide, (ACE)SKTFIQV(DPR)(4G6) peptide
Authors:Starnes, S.K, Horne, W.S, Del Valle, J.R.
Deposit date:2025-05-12
Release date:2025-12-03
Method:SOLUTION NMR
Cite:Impact of Strand Edge N-Amination on the Stability of a Parallel beta-Hairpin Fold.
J.Org.Chem., 2025
9OP1
DownloadVisualize
BU of 9op1 by Molmil
Cryo-EM structure of Candida albicans fluoride channel FEX in complex with Fab fragment
Descriptor: 10E8v4 Fab Heavy Chian, 10E8v4 Fab Light Chain, Transmembrane protein gp41,Fluoride export protein 1
Authors:Kang, C.-Y, An, M.J, Ohi, M.D, Stockbridge, R.B.
Deposit date:2025-05-16
Release date:2025-12-03
Method:ELECTRON MICROSCOPY (4.05 Å)
Cite:The molecular basis of sodium-dependent fluoride export by the eukaryotic fluoride channel FEX
To Be Published
9OQS
DownloadVisualize
BU of 9oqs by Molmil
N-hydroxylamine dehydratase (NohD) crystal structure with heme
Descriptor: 1,2-ETHANEDIOL, N-hydroxylamine dehydratase (NohD), PROTOPORPHYRIN IX CONTAINING FE
Authors:Higgins, M.A, Shi, X, Hoffarth, E.R, Du, Y.L, Ryan, K.S.
Deposit date:2025-05-21
Release date:2025-12-03
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Conversion of a Heme-Dependent Dehydratase to a Piperazate Synthase Reveals the Role of the Heme Propionate Group in N-N Bond-Formation.
J.Am.Chem.Soc., 147, 2025
9OQT
DownloadVisualize
BU of 9oqt by Molmil
N-hydroxylamine dehydratase (NohD) T98A/K167A mutant crystal structure with heme and N-hydroxylated ornithine (2.5h soak)
Descriptor: 1,2-ETHANEDIOL, N-hydroxylamine dehydratase (NohD), N~5~-hydroxy-L-ornithine, ...
Authors:Higgins, M.A, Shi, X, Hoffarth, E.R, Du, Y.L, Ryan, K.S.
Deposit date:2025-05-21
Release date:2025-12-03
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Conversion of a Heme-Dependent Dehydratase to a Piperazate Synthase Reveals the Role of the Heme Propionate Group in N-N Bond-Formation.
J.Am.Chem.Soc., 147, 2025
9OQU
DownloadVisualize
BU of 9oqu by Molmil
N-hydroxylamine dehydratase (NohD) T98A/K167A mutant crystal structure with heme and N-hydroxylated ornithine (5h soak)
Descriptor: N-hydroxylamine dehydratase (NohD), N~5~-hydroxy-L-ornithine, PROTOPORPHYRIN IX CONTAINING FE
Authors:Higgins, M.A, Shi, X, Hoffarth, E.R, Du, Y.L, Ryan, K.S.
Deposit date:2025-05-21
Release date:2025-12-03
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Conversion of a Heme-Dependent Dehydratase to a Piperazate Synthase Reveals the Role of the Heme Propionate Group in N-N Bond-Formation.
J.Am.Chem.Soc., 147, 2025
9OQV
DownloadVisualize
BU of 9oqv by Molmil
N-hydroxylamine dehydratase (NohD) R144Y/V96A (A1/A2) mutant crystal structure with heme
Descriptor: GLYCEROL, N-hydroxylamine dehydratase (NohD), PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Higgins, M.A, Shi, X, Hoffarth, E.R, Du, Y.L, Ryan, K.S.
Deposit date:2025-05-21
Release date:2025-12-03
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Conversion of a Heme-Dependent Dehydratase to a Piperazate Synthase Reveals the Role of the Heme Propionate Group in N-N Bond-Formation.
J.Am.Chem.Soc., 147, 2025
9OQW
DownloadVisualize
BU of 9oqw by Molmil
N-hydroxylamine dehydratase (NohD) H2F/F4P/P5S/R6Y/A59N/R144A (P1/P2/A1) mutant crystal structure with heme
Descriptor: 1,2-ETHANEDIOL, N-hydroxylamine dehydratase (NohD), PROTOPORPHYRIN IX CONTAINING FE
Authors:Higgins, M.A, Shi, X, Hoffarth, E.R, Du, Y.L, Ryan, K.S.
Deposit date:2025-05-21
Release date:2025-12-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Conversion of a Heme-Dependent Dehydratase to a Piperazate Synthase Reveals the Role of the Heme Propionate Group in N-N Bond-Formation.
J.Am.Chem.Soc., 147, 2025
9OQX
DownloadVisualize
BU of 9oqx by Molmil
N-hydroxylamine dehydratase (NohD) H2F/F4P/P5S/R6Y/R144Y/V96A (P1/A1/A2) mutant crystal structure with heme
Descriptor: GLYCEROL, N-hydroxylamine dehydratase (NohD), PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Higgins, M.A, Shi, X, Hoffarth, E.R, Du, Y.L, Ryan, K.S.
Deposit date:2025-05-21
Release date:2025-12-03
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Conversion of a Heme-Dependent Dehydratase to a Piperazate Synthase Reveals the Role of the Heme Propionate Group in N-N Bond-Formation.
J.Am.Chem.Soc., 147, 2025
9OQZ
DownloadVisualize
BU of 9oqz by Molmil
N-hydroxylamine dehydratase (NohD) A59N/R144Y/V96A (P2/A1/A2) mutant crystal structure with heme
Descriptor: N-hydroxylamine dehydratase (NohD), PROTOPORPHYRIN IX CONTAINING FE
Authors:Higgins, M.A, Shi, X, Hoffarth, E.R, Du, Y.L, Ryan, K.S.
Deposit date:2025-05-21
Release date:2025-12-03
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Conversion of a Heme-Dependent Dehydratase to a Piperazate Synthase Reveals the Role of the Heme Propionate Group in N-N Bond-Formation.
J.Am.Chem.Soc., 147, 2025
9OR0
DownloadVisualize
BU of 9or0 by Molmil
N-hydroxylamine dehydratase (NohD) H2F/F4P/P5S/R6Y/A59N/R144Y/V96A (P1/P2/A1/A2) mutant crystal structure with heme
Descriptor: 1,2-ETHANEDIOL, N-hydroxylamine dehydratase (NohD), PROTOPORPHYRIN IX CONTAINING FE
Authors:Higgins, M.A, Shi, X, Hoffarth, E.R, Du, Y.L, Ryan, K.S.
Deposit date:2025-05-21
Release date:2025-12-03
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Conversion of a Heme-Dependent Dehydratase to a Piperazate Synthase Reveals the Role of the Heme Propionate Group in N-N Bond-Formation.
J.Am.Chem.Soc., 147, 2025
9OR1
DownloadVisualize
BU of 9or1 by Molmil
N-hydroxylamine dehydratase (NohD) H2F/F4P/P5S/R6Y/A59N/R144Y/V96A/D172E/L172Q/D173P/R176V (P1/P2/A1/A2/A3) mutant crystal structure with heme and N-hydroxylated ornithine
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, N-hydroxylamine dehydratase (NohD), N~5~-hydroxy-L-ornithine, ...
Authors:Higgins, M.A, Shi, X, Hoffarth, E.R, Du, Y.L, Ryan, K.S.
Deposit date:2025-05-21
Release date:2025-12-03
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Conversion of a Heme-Dependent Dehydratase to a Piperazate Synthase Reveals the Role of the Heme Propionate Group in N-N Bond-Formation.
J.Am.Chem.Soc., 147, 2025
9OT6
DownloadVisualize
BU of 9ot6 by Molmil
Cryo-EM structure of the PI4KA complex bound to an EFR3 interfering nanobody (F3IN)
Descriptor: EFR3 interfering Nanobody (F3IN), Hyccin, Phosphatidylinositol 4-kinase alpha, ...
Authors:Shaw, A.L, Suresh, S, Yip, C.K, Burke, J.E.
Deposit date:2025-05-26
Release date:2025-12-03
Method:ELECTRON MICROSCOPY (3.54 Å)
Cite:Development of an inhibitory TTC7B selective nanobody that blocks EFR3 recruitment of PI4KA.
J.Biol.Chem., 2025
9OUK
DownloadVisualize
BU of 9ouk by Molmil
DDB1-CRBN with Ikaros(ZF2) and DEG-47: composite map and model submission
Descriptor: DNA damage-binding protein 1, DNA-binding protein Ikaros, N-{2-[(3S)-2,6-dioxopiperidin-3-yl]-1-oxo-2,3-dihydro-1H-isoindol-5-yl}benzamide, ...
Authors:Rizvi, Z, Lander, G.C.
Deposit date:2025-05-28
Release date:2025-12-03
Method:ELECTRON MICROSCOPY (2.69 Å)
Cite:Identification of a cryptic allosteric site on the E3 ligase adapter protein cereblon
To Be Published
9OUV
DownloadVisualize
BU of 9ouv by Molmil
Crystal structure of human IGG1 FC fragment-FC-gamma receptor IIB complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Immunoglobulin gamma-1 heavy chain Fc fragment, ...
Authors:Tolbert, W.D, Pazgier, M.
Deposit date:2025-05-29
Release date:2025-12-03
Method:X-RAY DIFFRACTION (3.07 Å)
Cite:Cross-species analysis of FcgRIIa/b (CD32a/b) polymorphisms at position 131: structural and functional insights into the mechanism of IgG- mediated phagocytosis in human and macaque
Front Immunol, 2025
9OVF
DownloadVisualize
BU of 9ovf by Molmil
Rubredoxin covalently linked to benzo-18-crown-6
Descriptor: 2,3,5,6,8,9,11,12,14,15-decahydro-1,4,7,10,13,16-benzohexaoxacyclooctadecine-18-thiol, ACETATE ION, FE (III) ION, ...
Authors:Adhami, N, Sawaya, M.R, Shafaat, H.S, Rodriguez, J.A, Spokoyny, A.M.
Deposit date:2025-05-29
Release date:2025-12-03
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Site-selective Au(III)-mediated metalloenzyme conjugations
To Be Published
9OZO
DownloadVisualize
BU of 9ozo by Molmil
Structure of phospholipase D BetaIB1i from Sicarius terrosus venom, H47N mutant bound to product and substrate sphingolipids at 2.2 A resolution from a 2-day old crystal
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-aminoethyl (2S,3R,4E)-2-dodecanamido-3-hydroxyheptadec-4-en-1-yl hydrogen (S)-phosphate, Dermonecrotic toxin StSicTox-betaIB1i, ...
Authors:Sundman, A.K, Montfort, W.R, Binford, G.J, Cordes, M.H.
Deposit date:2025-06-05
Release date:2025-12-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of phospholipase D BetaIB1i from Sicarius terrosus venom, H47N mutant bound to product and substrate sphingolipids at 1.85 A resolution
To Be Published
9OZS
DownloadVisualize
BU of 9ozs by Molmil
Structure of phospholipase D BetaIB1i from Sicarius terrosus venom, H47N mutant bound to substrate sphingolipids at 2.60 A resolution
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-aminoethyl (2S,3R,4E)-2-dodecanamido-3-hydroxyheptadec-4-en-1-yl hydrogen (S)-phosphate, Dermonecrotic toxin StSicTox-betaIB1i, ...
Authors:Sundman, A.K, Montfort, W.R, Binford, G.J, Cordes, M.H.
Deposit date:2025-06-05
Release date:2025-12-03
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of phospholipase D BetaIB1i from Sicarius terrosus venom, H47N mutant bound to product and substrate sphingolipids at 1.85 A resolution
To Be Published
9P44
DownloadVisualize
BU of 9p44 by Molmil
Crystal structure of KRAS-G12D (GDP-bound) in complex with BBO-11818
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Isoform 2B of GTPase KRas, MAGNESIUM ION, ...
Authors:Chan, A.H, Bratcher, D.R, Simanshu, D.K.
Deposit date:2025-06-16
Release date:2025-12-03
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Discovery of BBO-11818, a Potent and Selective Non-covalent Inhibitor of (ON) and (OFF) KRAS with Activity Against Multiple Oncogenic Mutants
Cancer Discov, 2025
9P45
DownloadVisualize
BU of 9p45 by Molmil
Crystal structure of KRAS-G12D (GMPPNP-bound) in complex with BBO-11818
Descriptor: Isoform 2B of GTPase KRas, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
Authors:Chan, A.H, Bratcher, D.R, Simanshu, D.K.
Deposit date:2025-06-16
Release date:2025-12-03
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Discovery of BBO-11818, a Potent and Selective Non-covalent Inhibitor of (ON) and (OFF) KRAS with Activity Against Multiple Oncogenic Mutants
Cancer Discov, 2025
9P46
DownloadVisualize
BU of 9p46 by Molmil
Crystal structure of HRAS-G12D/Q95H (GMPPNP-bound) in complex with BBO-11818
Descriptor: GTPase HRas, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
Authors:Chan, A.H, Bratcher, D.R, Simanshu, D.K.
Deposit date:2025-06-16
Release date:2025-12-03
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Discovery of BBO-11818, a Potent and Selective Non-covalent Inhibitor of (ON) and (OFF) KRAS with Activity Against Multiple Oncogenic Mutants
Cancer Discov, 2025
9PDQ
DownloadVisualize
BU of 9pdq by Molmil
Human OCTN2 bound to carnitine in the occluded conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CARNITINE, Organic cation/carnitine transporter 2, ...
Authors:Davies, J.S, Zeng, Y.Z, Stewart, A.G.
Deposit date:2025-06-30
Release date:2025-12-03
Method:ELECTRON MICROSCOPY (2.72 Å)
Cite:Structural basis of sodium ion-dependent carnitine transport by OCTN2
To Be Published
9PFB
DownloadVisualize
BU of 9pfb by Molmil
Human OCTN2 bound to ipratropium in an inward-facing conformation
Descriptor: IPRATROPIUM, Organic cation/carnitine transporter 2, SODIUM ION
Authors:Davies, J.S, Zeng, Y.Z, Stewart, A.G.
Deposit date:2025-07-03
Release date:2025-12-03
Method:ELECTRON MICROSCOPY (3.06 Å)
Cite:Structural basis of sodium ion-dependent carnitine transport by OCTN2
To Be Published

245663

PDB entries from 2025-12-03

PDB statisticsPDBj update infoContact PDBjnumon