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Legacy flatfile-incompatible PDB entries
8CQ7
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BU of 8cq7 by Molmil
Crystal structure of phyllanthoside bound to the Candida albicans 80S ribosome
Descriptor: 18S, 25S, 3-O-acetyl-2-O-(3-O-acetyl-6-deoxy-beta-D-glucopyranosyl)-6-deoxy-1-O-{[(2R,2'S,3a'R,4''S,5''R,6'S,7a'S)-5''-methyl-4''-{[(2E)-3-phenylprop-2-enoyl]oxy}decahydrodispiro[oxirane-2,3'-[1]benzofuran-2',2''-pyran]-6'-yl]carbonyl}-beta-D-glucopyranose, ...
Authors:Kolosova, O, Zgadzay, Y, Yusupov, M.
Deposit date:2023-03-03
Release date:2024-09-11
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Drug-induced rotational movement of the ribosome is a key factor for read-through enhancement
To Be Published
8CRX
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BU of 8crx by Molmil
Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound
Descriptor: 23S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
Authors:Lomakin, I.B, Devarkar, S.C, Bunick, C.G.
Deposit date:2022-05-12
Release date:2023-03-22
Last modified:2023-04-19
Method:ELECTRON MICROSCOPY (2.78 Å)
Cite:Sarecycline inhibits protein translation in Cutibacterium acnes 70S ribosome using a two-site mechanism.
Nucleic Acids Res., 51, 2023
8CS3
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BU of 8cs3 by Molmil
[CAG/TCG] Self-Assembled 3D DNA Hexagonal Tensegrity Triangle
Descriptor: DNA (5'-D(*CP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(*TP*CP*GP*TP*GP*AP*TP*GP*T)-3'), DNA (5'-D(P*CP*CP*GP*TP*AP*CP*A)-3'), ...
Authors:Lu, B, Vecchioni, S, Ohayon, Y.P, Seeman, N.C, Mao, C, Sha, R.
Deposit date:2022-05-12
Release date:2023-01-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (5.14 Å)
Cite:Programmable 3D Hexagonal Geometry of DNA Tensegrity Triangles.
Angew.Chem.Int.Ed.Engl., 62, 2023
8CS4
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BU of 8cs4 by Molmil
[AGC/GTC] Self-Assembled 3D DNA Hexagonal Tensegrity Triangle
Descriptor: DNA (5'-D(*AP*GP*CP*CP*AP*GP*CP*CP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(*GP*TP*CP*TP*GP*AP*TP*GP*T)-3'), DNA (5'-D(P*CP*CP*GP*TP*AP*CP*A)-3'), ...
Authors:Lu, B, Vecchioni, S, Ohayon, Y.P, Seeman, N.C, Mao, C, Sha, R.
Deposit date:2022-05-12
Release date:2023-01-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (6.03 Å)
Cite:Programmable 3D Hexagonal Geometry of DNA Tensegrity Triangles.
Angew.Chem.Int.Ed.Engl., 62, 2023
8CS5
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BU of 8cs5 by Molmil
[GGA/CTC] Self-Assembled 3D DNA Hexagonal Tensegrity Triangle
Descriptor: DNA (5'-D(*CP*TP*CP*TP*GP*AP*TP*GP*T)-3'), DNA (5'-D(*GP*GP*AP*CP*AP*GP*CP*CP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*GP*TP*AP*CP*A)-3'), ...
Authors:Lu, B, Vecchioni, S, Ohayon, Y.P, Seeman, N.C, Mao, C, Sha, R.
Deposit date:2022-05-12
Release date:2023-01-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (6.52 Å)
Cite:Programmable 3D Hexagonal Geometry of DNA Tensegrity Triangles.
Angew.Chem.Int.Ed.Engl., 62, 2023
8CS8
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BU of 8cs8 by Molmil
[High G:C, High Vapor Diffusion] Self-Assembled 3D DNA Hexagonal Tensegrity Triangle
Descriptor: DNA (5'-D(*GP*AP*GP*GP*AP*GP*CP*CP*TP*GP*CP*GP*CP*GP*GP*AP*CP*AP*GP*AP*G)-3'), DNA (5'-D(*TP*CP*CP*TP*CP*TP*GP*T)-3'), DNA (5'-D(P*CP*CP*GP*CP*GP*CP*A)-3'), ...
Authors:Lu, B, Vecchioni, S, Ohayon, Y.P, Seeman, N.C, Mao, C, Sha, R.
Deposit date:2022-05-12
Release date:2022-12-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (6 Å)
Cite:Programmable 3D Hexagonal Geometry of DNA Tensegrity Triangles.
Angew.Chem.Int.Ed.Engl., 62, 2023
8CS9
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BU of 8cs9 by Molmil
Composite reconstruction of Class 1 of the erythrocyte ankyrin-1 complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Ammonium transporter Rh type A, ...
Authors:Vallese, F, Kim, K, Yen, L.Y, Johnston, J.D, Noble, A.J, Cali, T, Clarke, O.B.
Deposit date:2022-05-12
Release date:2022-07-20
Last modified:2022-07-27
Method:ELECTRON MICROSCOPY (2.74 Å)
Cite:Architecture of the human erythrocyte ankyrin-1 complex.
Nat.Struct.Mol.Biol., 29, 2022
8CSJ
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BU of 8csj by Molmil
Cryo-EM structure of NTD-directed non-neutralizing antibody 4-33 in complex with prefusion SARS-CoV-2 spike glycoprotein
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(2-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Reddem, E.R, Shapiro, L.
Deposit date:2022-05-12
Release date:2023-05-17
Method:ELECTRON MICROSCOPY (3.53 Å)
Cite:Cryo-EM structure of NTD-directed non-neutralizing antibody 4-33 in complex with prefusion SARS-CoV-2 spike glycoprotein
To Be Published
8CSL
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BU of 8csl by Molmil
Sub-tomogram averaging of erythrocyte ankyrin-1 complex
Descriptor: Ammonium transporter Rh type A, Ankyrin-1, Band 3 anion transport protein, ...
Authors:Vallese, F, Kim, K, Yen, L.Y, Johnston, J.D, Noble, A.J, Cali, T, Clarke, O.B.
Deposit date:2022-05-12
Release date:2022-07-20
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (25 Å)
Cite:Architecture of the human erythrocyte ankyrin-1 complex.
Nat.Struct.Mol.Biol., 29, 2022
8CSY
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BU of 8csy by Molmil
Local refinement of cytoplasmic domains of band3-I in class 2 of erythrocyte ankyrin-1 complex
Descriptor: Band 3 anion transport protein
Authors:Vallese, F, Kim, K, Yen, L.Y, Johnston, J.D, Noble, A.J, Cali, T, Clarke, O.B.
Deposit date:2022-05-13
Release date:2022-07-20
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Architecture of the human erythrocyte ankyrin-1 complex.
Nat.Struct.Mol.Biol., 29, 2022
8CT1
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BU of 8ct1 by Molmil
CryoEM structure of human S-OPA1 assembled on lipid membrane in membrane-adjacent state
Descriptor: Dynamin-like 120 kDa protein, mitochondrial
Authors:Du Pont, K.E, Aydin, H.
Deposit date:2022-05-13
Release date:2023-08-30
Last modified:2023-09-13
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Structural mechanism of mitochondrial membrane remodelling by human OPA1.
Nature, 620, 2023
8CT9
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BU of 8ct9 by Molmil
CryoEM structure of human S-OPA1 assembled on lipid membrane in membrane-distal state
Descriptor: CARDIOLIPIN, Dynamin-like 120 kDa protein, mitochondrial
Authors:Du Pont, K.E, Aydin, H.
Deposit date:2022-05-13
Release date:2023-08-30
Last modified:2023-09-13
Method:ELECTRON MICROSCOPY (6.8 Å)
Cite:Structural mechanism of mitochondrial membrane remodelling by human OPA1.
Nature, 620, 2023
8CUE
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BU of 8cue by Molmil
CryoEM structure of the T-pilus from Agrobacterium tumefaciens
Descriptor: 1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Protein virB2
Authors:Bui, K.H, Black, C.S.
Deposit date:2022-05-17
Release date:2023-02-01
Last modified:2024-04-17
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-EM structure of the Agrobacterium tumefaciens T-pilus reveals the importance of positive charges in the lumen.
Structure, 31, 2023
8CVJ
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BU of 8cvj by Molmil
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution
Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Syroegin, E.A, Aleksandrova, E.V, Polikanov, Y.S.
Deposit date:2022-05-18
Release date:2022-10-19
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Insights into the ribosome function from the structures of non-arrested ribosome-nascent chain complexes.
Nat.Chem., 15, 2023
8CVK
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BU of 8cvk by Molmil
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Syroegin, E.A, Aleksandrova, E.V, Polikanov, Y.S.
Deposit date:2022-05-18
Release date:2022-10-19
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Insights into the ribosome function from the structures of non-arrested ribosome-nascent chain complexes.
Nat.Chem., 15, 2023
8CVL
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BU of 8cvl by Molmil
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution
Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Syroegin, E.A, Aleksandrova, E.V, Polikanov, Y.S.
Deposit date:2022-05-18
Release date:2022-10-19
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Insights into the ribosome function from the structures of non-arrested ribosome-nascent chain complexes.
Nat.Chem., 15, 2023
8CVT
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BU of 8cvt by Molmil
Human 19S-20S proteasome, state SD2
Descriptor: 26S protease regulatory subunit 10B, 26S protease regulatory subunit 8, 26S proteasome complex subunit SEM1, ...
Authors:Zhao, J.
Deposit date:2022-05-18
Release date:2022-11-02
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural insights into the human PA28-20S proteasome enabled by efficient tagging and purification of endogenous proteins.
Proc.Natl.Acad.Sci.USA, 119, 2022
8CW4
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BU of 8cw4 by Molmil
CryoEM structure of the N-pilus from Escherichia coli
Descriptor: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, Conjugal transfer protein TraM
Authors:Bui, K.H, Black, C.S.
Deposit date:2022-05-18
Release date:2023-02-01
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Cryo-EM structure of the Agrobacterium tumefaciens T-pilus reveals the importance of positive charges in the lumen.
Structure, 31, 2023
8CWM
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BU of 8cwm by Molmil
Cryo-EM structure of the supercoiled S. islandicus REY15A archaeal flagellar filament
Descriptor: Flagellin
Authors:Kreutzberger, M.A.B, Liu, J, Krupovic, M, Egelman, E.H.
Deposit date:2022-05-19
Release date:2022-09-07
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Convergent evolution in the supercoiling of prokaryotic flagellar filaments.
Cell, 185, 2022
8CXG
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BU of 8cxg by Molmil
Structures of Zika Virus in Complex with Antibodies Targeting E Dimer Epitopes and Basis for Neutralization Efficacy
Descriptor: Ankyrin repeat family A protein 2,Envelope E protein, C8 scFv heavy chain, C8 scFv light chain, ...
Authors:Liu, W, Zhang, X.K, Gong, D.Y, Dai, X.H, Sharma, A, Zhang, T.H, Rey, F, Zhou, Z.H.
Deposit date:2022-05-21
Release date:2023-06-07
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structures of Zika Virus in Complex with Antibodies Targeting E Dimer Epitopes and Basis for Neutralization Efficacy
To Be Published
8CXH
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BU of 8cxh by Molmil
Structures of Zika Virus in Complex with Antibodies Targeting E Dimer Epitopes and Basis for Neutralization Efficacy
Descriptor: Ankyrin repeat family A protein 2,Envelope E protein, C10 heavy chain, C10 light chain, ...
Authors:Liu, W, Zhang, X.K, Gong, D.Y, Dai, X.H, Sharma, A, Zhang, T.H, Rey, F, Zhou, Z.H.
Deposit date:2022-05-21
Release date:2023-06-07
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structures of Zika Virus in Complex with Antibodies Targeting E Dimer Epitopes and Basis for Neutralization Efficacy
To Be Published
8CXM
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BU of 8cxm by Molmil
Cryo-EM structure of the supercoiled E. coli K12 flagellar filament core, Normal waveform
Descriptor: Flagellin
Authors:Sonani, R.R, Kreutzberger, M.A.B, Sebastian, A.L, Scharf, B, Egelman, E.H.
Deposit date:2022-05-21
Release date:2022-09-07
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.21 Å)
Cite:Convergent evolution in the supercoiling of prokaryotic flagellar filaments.
Cell, 185, 2022
8CXP
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BU of 8cxp by Molmil
Characterisation of a Seneca Valley Virus Thermostable Mutant
Descriptor: Capsid protein VP1, Capsid protein VP3, VP2, ...
Authors:Jayawardena, N, Bostina, M, Strauss, M.
Deposit date:2022-05-22
Release date:2022-09-28
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (2.47 Å)
Cite:Characterisation of a Seneca Valley virus thermostable mutant.
Virology, 575, 2022
8CYG
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BU of 8cyg by Molmil
Cryo-EM structure of TTMV-LY1 anellovirus virus-like particle
Descriptor: Capsid protein
Authors:Liou, S.H, Delagrave, S, Swanson, K.
Deposit date:2022-05-23
Release date:2024-09-04
Method:ELECTRON MICROSCOPY (3.98 Å)
Cite:Structure of anellovirus-like particles reveal a mechanism for immune evasion.
Nat Commun, 15, 2024
8CYN
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BU of 8cyn by Molmil
[2T7+20bp Linker] Self-Assembled 3D DNA Hexagonal Tensegrity Triangle with 20 bp Sticky-End Linker
Descriptor: DNA (5'-D(*GP*CP*GP*CP*AP*GP*CP*CP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*TP*GP*T)-3'), DNA (5'-D(P*CP*CP*GP*TP*AP*CP*A)-3'), ...
Authors:Lu, B, Vecchioni, S, Ohayon, Y.P, Seeman, N.C, Mao, C, Sha, R.
Deposit date:2022-05-24
Release date:2023-01-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (9.45 Å)
Cite:Programmable 3D Hexagonal Geometry of DNA Tensegrity Triangles.
Angew.Chem.Int.Ed.Engl., 62, 2023

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PDB entries from 2024-09-11

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