Legacy flatfile-incompatible PDB entries

7JQM	Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-002, mRNA, and deacylated P-site tRNA at 3.05A resolution Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... Authors: Mardirossian, M, Sola, R, Beckert, B, Valencic, E, Collis, D.W.P, Borisek, J, Armas, F, Di Stasi, A, Buchmann, J, Syroegin, E.A, Polikanov, Y.S, Magistrato, A, Hilpert, K, Wilson, D.N, Scocchi, M. Deposit date: 2020-08-11 Release date: 2020-08-26 Last modified: 2025-03-19 Method: X-RAY DIFFRACTION (3.05 Å) Cite: Peptide Inhibitors of Bacterial Protein Synthesis with Broad Spectrum and SbmA-Independent Bactericidal Activity against Clinical Pathogens. J.Med.Chem., 63, 2020
7JQU	Abeta 16-36 beta-hairpin mimic with E22G Arctic mutation Descriptor: Abeta 16-36 beta-hairpin mimic VAL-ORN-LYS-LEU-VAL-MEA-PHE-ALA-GLN-ORN-ALA-ILE-ILE-GLY-LEU-MET Authors: Kreutzer, A.G, McKnelly, K.J, Nowick, J.S. Deposit date: 2020-08-11 Release date: 2021-09-08 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.611 Å) Cite: Effects of Familial Alzheimer's Disease Mutations on the Assembly of a beta-Hairpin Peptide Derived from A beta 16-36 . Biochemistry, 61, 2022
7JSS	ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Carbone, C.E, Korostelev, A.A. Deposit date: 2020-08-15 Release date: 2020-11-11 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: ArfB can displace mRNA to rescue stalled ribosomes. Nat Commun, 11, 2020
7JSW	ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Carbone, C.E, Korostelev, A.A. Deposit date: 2020-08-16 Release date: 2020-11-11 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: ArfB can displace mRNA to rescue stalled ribosomes. Nat Commun, 11, 2020
7JSZ	ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Carbone, C.E, Korostelev, A.A. Deposit date: 2020-08-16 Release date: 2020-11-11 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: ArfB can displace mRNA to rescue stalled ribosomes. Nat Commun, 11, 2020
7JT1	70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound (+9-III) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Carbone, C.E, Korostelev, A.A. Deposit date: 2020-08-16 Release date: 2020-11-11 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: ArfB can displace mRNA to rescue stalled ribosomes Nat Commun, 11, 2020
7JT2	70S ribosome stalled on long mRNA with ArfB bound in the A site Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Carbone, C.E, Korostelev, A.A. Deposit date: 2020-08-16 Release date: 2020-11-11 Last modified: 2024-11-06 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: ArfB can displace mRNA to rescue stalled ribosomes Nat Commun, 11, 2020
7JT3	Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Carbone, C.E, Korostelev, A.A. Deposit date: 2020-08-17 Release date: 2020-11-11 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: ArfB can displace mRNA to rescue stalled ribosomes Nat Commun, 11, 2020
7JU4	Radial spoke 2 stalk, IDAc, and N-DRC attached with doublet microtubule Descriptor: 28 kDa inner dynein arm light chain, axonemal, ADENOSINE-5'-TRIPHOSPHATE, ... Authors: Gui, M, Ma, M, Sze-Tu, E, Wang, X, Koh, F, Zhong, E, Berger, B, Davis, J, Dutcher, S, Zhang, R, Brown, A. Deposit date: 2020-08-19 Release date: 2020-12-16 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structures of radial spokes and associated complexes important for ciliary motility. Nat.Struct.Mol.Biol., 28, 2021
7K00	Structure of the Bacterial Ribosome at 2 Angstrom Resolution Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Watson, Z.L, Ward, F.R, Meheust, R, Ad, O, Schepartz, A, Banfield, J.F, Cate, J.H.D. Deposit date: 2020-09-02 Release date: 2020-09-23 Last modified: 2025-03-19 Method: ELECTRON MICROSCOPY (1.98 Å) Cite: Structure of the bacterial ribosome at 2 angstrom resolution. Elife, 9, 2020
7K0S	Cryo-EM structure of rabbit RyR1 in the presence of Mg2+ and AMP-PCP in nanodisc Descriptor: MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, RyR1, ... Authors: Nayak, A.R, Samso, M. Deposit date: 2020-09-05 Release date: 2021-09-22 Last modified: 2024-11-20 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Interplay between Mg2+ and Ca2+ at multiple sites of the ryanodine receptor Nat Commun, 15, 2024
7K0T	Cryo-EM structure of rabbit RyR1 in the presence of AMP-PCP in nanodisc Descriptor: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, RyR1, ZINC ION Authors: Nayak, A.R, Samso, M. Deposit date: 2020-09-05 Release date: 2021-09-22 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (4.3 Å) Cite: Ca 2+ -inactivation of the mammalian ryanodine receptor type 1 in a lipidic environment revealed by cryo-EM. Elife, 11, 2022
7K22	Murine polyomavirus pentavalent capsomer with 8A7H5 Fab, subparticle reconstruction Descriptor: 8A7H5 Fab heavy chain, 8A7H5 Fab light chain, Capsid protein VP1 Authors: Goetschius, D.J, Hafenstein, S.L. Deposit date: 2020-09-08 Release date: 2020-10-07 Last modified: 2025-05-21 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Antibody escape by polyomavirus capsid mutation facilitates neurovirulence. Elife, 9, 2020
7K23	Murine polyomavirus hexavalent capsomer with 8A7H5 Fab, subparticle reconstruction Descriptor: 8A7H5 Fab heavy chain, 8A7H5 Fab light chain, Capsid protein VP1 Authors: Goetschius, D.J, Hafenstein, S.L. Deposit date: 2020-09-08 Release date: 2020-10-07 Last modified: 2024-10-23 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Antibody escape by polyomavirus capsid mutation facilitates neurovirulence. Elife, 9, 2020
7K24	Murine polyomavirus pentavalent capsomer, subparticle reconstruction Descriptor: Capsid protein VP1 Authors: Goetschius, D.J, Hafenstein, S.L. Deposit date: 2020-09-08 Release date: 2020-10-07 Last modified: 2024-10-23 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Antibody escape by polyomavirus capsid mutation facilitates neurovirulence. Elife, 9, 2020
7K50	Pre-translocation non-frameshifting(CCA-A) complex (Structure I) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Demo, G, Loveland, A.B, Svidritskiy, E, Gamper, H.B, Hou, Y.M, Korostelev, A.A. Deposit date: 2020-09-16 Release date: 2021-07-28 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structural basis for +1 ribosomal frameshifting during EF-G-catalyzed translocation. Nat Commun, 12, 2021
7K51	Mid-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure II) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Demo, G, Loveland, A.B, Svidritskiy, E, Gamper, H.B, Hou, Y.M, Korostelev, A.A. Deposit date: 2020-09-16 Release date: 2021-07-28 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Structural basis for +1 ribosomal frameshifting during EF-G-catalyzed translocation. Nat Commun, 12, 2021
7K52	Near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Demo, G, Loveland, A.B, Svidritskiy, E, Gamper, H.B, Hou, Y.M, Korostelev, A.A. Deposit date: 2020-09-16 Release date: 2021-07-28 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structural basis for +1 ribosomal frameshifting during EF-G-catalyzed translocation. Nat Commun, 12, 2021
7K53	Pre-translocation +1-frameshifting(CCC-A) complex (Structure I-FS) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Demo, G, Loveland, A.B, Svidritskiy, E, Gamper, H.B, Hou, Y.M, Korostelev, A.A. Deposit date: 2020-09-16 Release date: 2021-07-28 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Structural basis for +1 ribosomal frameshifting during EF-G-catalyzed translocation. Nat Commun, 12, 2021
7K54	Mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Demo, G, Loveland, A.B, Svidritskiy, E, Gamper, H.B, Hou, Y.M, Korostelev, A.A. Deposit date: 2020-09-16 Release date: 2021-07-28 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Structural basis for +1 ribosomal frameshifting during EF-G-catalyzed translocation. Nat Commun, 12, 2021
7K55	Near post-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure III-FS) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Demo, G, Loveland, A.B, Svidritskiy, E, Gamper, H.B, Hou, Y.M, Korostelev, A.A. Deposit date: 2020-09-16 Release date: 2021-07-28 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Structural basis for +1 ribosomal frameshifting during EF-G-catalyzed translocation. Nat Commun, 12, 2021
7K58	Structure of outer-arm dyneins bound to microtubule with microtubule binding state 1(MTBS-1) Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Dynein heavy chain, ... Authors: Qinhui, R, Kai, Z. Deposit date: 2020-09-16 Release date: 2021-09-29 Last modified: 2024-11-13 Method: ELECTRON MICROSCOPY (4 Å) Cite: Structures of outer-arm dynein array on microtubule doublet reveal a motor coordination mechanism. Nat.Struct.Mol.Biol., 28, 2021
7K5B	Structure of outer-arm dynein bound to microtubule doublet in microtubule binding state 2 (MTBS-2) Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Dynein heavy chain, ... Authors: Rao, Q, Zhang, K. Deposit date: 2020-09-16 Release date: 2021-09-29 Last modified: 2024-11-20 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Structures of outer-arm dynein array on microtubule doublet reveal a motor coordination mechanism. Nat.Struct.Mol.Biol., 28, 2021
7K6V	Crystal Structure of Virus-like Particles of GII.4 Norovirus Houston virus (HOV) Descriptor: 1,2-ETHANEDIOL, CADMIUM ION, CHLORIDE ION, ... Authors: Hu, L, Prasad, B.V.V. Deposit date: 2020-09-21 Release date: 2022-03-02 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3 Å) Cite: Crystal structure of GII.4 Norovirus capsid reveals inherent conformational flexibility of the capsid protein To Be Published
7KEK	Structure of the free outer-arm dynein in pre-parallel state Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Dynein alpha heavy chain, ... Authors: Rao, Q, Zhang, K. Deposit date: 2020-10-11 Release date: 2021-09-29 Last modified: 2024-10-16 Method: ELECTRON MICROSCOPY (8 Å) Cite: Structures of outer-arm dynein array on microtubule doublet reveal a motor coordination mechanism. Nat.Struct.Mol.Biol., 28, 2021

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