Legacy flatfile-incompatible PDB entries

8OO7	CryoEM Structure INO80core Hexasome complex composite model state1 Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Actin-related protein 5, ... Authors: Zhang, M, Jungblut, A, Hoffmann, T, Eustermann, S. Deposit date: 2023-04-04 Release date: 2023-07-26 Last modified: 2023-08-02 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Hexasome-INO80 complex reveals structural basis of noncanonical nucleosome remodeling. Science, 381, 2023
8OOC	CryoEM Structure INO80core Hexasome complex Rvb core refinement state1 Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Chromatin-remodeling ATPase Ino80, ... Authors: Zhang, M, Jungblut, A, Hoffmann, T, Eustermann, S. Deposit date: 2023-04-05 Release date: 2023-08-02 Method: ELECTRON MICROSCOPY (2.93 Å) Cite: Hexasome-INO80 complex reveals structural basis of noncanonical nucleosome remodeling. Science, 381, 2023
8OOL	Glutamine synthetase from Methanothermococcus thermolithotrophicus with TbXo4 at a resolution of 1.65 A Descriptor: GLYCEROL, Glutamine synthetase from Methanothermococcus thermolithotrophicus, SULFATE ION, ... Authors: Mueller, M.-C, Wagner, T. Deposit date: 2023-04-05 Release date: 2024-01-24 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Differences in regulation mechanisms of glutamine synthetases from methanogenic archaea unveiled by structural investigations. Commun Biol, 7, 2024
8OON	Glutamine synthetase from Methanothermococcus thermolithotrophicus at a resolution of 2.43 A Descriptor: 1,2-ETHANEDIOL, GLYCEROL, Glutamine synthetase from Methanothermococcus thermolithotrophicus, ... Authors: Mueller, M.-C, Lemaire, O.N, Wagner, T. Deposit date: 2023-04-05 Release date: 2024-01-24 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.43 Å) Cite: Differences in regulation mechanisms of glutamine synthetases from methanogenic archaea unveiled by structural investigations. Commun Biol, 7, 2024
8OOP	CryoEM Structure INO80core Hexasome complex composite model state2 Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Actin-related protein 5, ... Authors: Zhang, M, Jungblut, A, Hoffmann, T, Eustermann, S. Deposit date: 2023-04-05 Release date: 2023-07-26 Last modified: 2023-08-02 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Hexasome-INO80 complex reveals structural basis of noncanonical nucleosome remodeling. Science, 381, 2023
8OOQ	Glutamine synthetase from Methanothermococcus thermolithotrophicus in complex with 2-oxoglutarate and Mg at 2.91 A resolution Descriptor: 1,2-ETHANEDIOL, 2-OXOGLUTARIC ACID, DI(HYDROXYETHYL)ETHER, ... Authors: Mueller, M.-C, Wagner, T. Deposit date: 2023-04-05 Release date: 2024-01-24 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.91 Å) Cite: Differences in regulation mechanisms of glutamine synthetases from methanogenic archaea unveiled by structural investigations. Commun Biol, 7, 2024
8OOR	CryoEM Structure INO80core Hexasome complex Rvb core refinement state2 Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Actin-related protein 5, ... Authors: Zhang, M, Jungblut, A, Hoffmann, T, Eustermann, S. Deposit date: 2023-04-05 Release date: 2023-07-26 Last modified: 2023-08-02 Method: ELECTRON MICROSCOPY (2.87 Å) Cite: Hexasome-INO80 complex reveals structural basis of noncanonical nucleosome remodeling. Science, 381, 2023
8OOW	Glutamine synthetase from Methermicoccus shengliensis at a resolution of 2.64 A Descriptor: 1,2-ETHANEDIOL, GLYCEROL, Glutamine synthetase, ... Authors: Mueller, M.-C, Lemaire, O.N, Wagner, T. Deposit date: 2023-04-06 Release date: 2024-01-24 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.64 Å) Cite: Differences in regulation mechanisms of glutamine synthetases from methanogenic archaea unveiled by structural investigations. Commun Biol, 7, 2024
8OOX	Glutamine synthetase from Methermicoccus shengliensis at a resolution of 3.09 A Descriptor: CITRIC ACID, GLYCEROL, Glutamine synthetase, ... Authors: Mueller, M.-C, Lemaire, O.N, Wagner, T. Deposit date: 2023-04-06 Release date: 2024-01-24 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (3.09 Å) Cite: Differences in regulation mechanisms of glutamine synthetases from methanogenic archaea unveiled by structural investigations. Commun Biol, 7, 2024
8OOZ	Glutamine synthetase from Methermicoccus shengliensis in complex with MgATP at 2.7 A resolution Descriptor: ADENOSINE-5'-TRIPHOSPHATE, FORMIC ACID, GLYCEROL, ... Authors: Mueller, M.-C, Lemaire, O.N, Wagner, T. Deposit date: 2023-04-06 Release date: 2024-01-24 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Differences in regulation mechanisms of glutamine synthetases from methanogenic archaea unveiled by structural investigations. Commun Biol, 7, 2024
8OPA	Virus-like Particle based on PVY coat protein with stacked-ring architecture Descriptor: Genome polyprotein (Fragment) Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-01-24 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (3.34 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPB	Virus-like Particle based on PVY coat protein with RNA-free helical architecture Descriptor: Genome polyprotein (Fragment) Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-02-14 Method: ELECTRON MICROSCOPY (3.58 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPC	Virus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNA Descriptor: Genome polyprotein (Fragment), RNA (5'-R(P*UP*UP*UP*UP*U)-3') Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-01-24 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (2.99 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPD	Virus-like Particle based on PVY coat protein with dC40 deletion with stacked-ring architecture Descriptor: Genome polyprotein (Fragment) Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-01-24 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPE	Virus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNA Descriptor: Genome polyprotein (Fragment), RNA (5'-R(P*UP*UP*UP*UP*U)-3') Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-01-24 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (3.09 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPF	Virus-like Particle based on PVY coat protein with dC60 deletion with RNA-free helical architecture Descriptor: Genome polyprotein (Fragment) Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-01-24 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (2.83 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPG	Virus-like Particle based on PVY coat protein with dC79 deletion with RNA-free helical architecture Descriptor: Genome polyprotein (Fragment) Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-01-24 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPH	Head-to-tail double ring assembly from truncated PVY coat protein Descriptor: Genome polyprotein Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-01-24 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (2.93 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPJ	Global refinement of cubic assembly from truncated PVY coat protein with K176C mutation Descriptor: Genome polyprotein (Fragment) Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-01-24 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (2.99 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPK	Local refinement of cubic assembly from truncated PVY coat protein with K176C mutation Descriptor: Genome polyprotein Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-01-24 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (3.16 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPL	Virus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNA Descriptor: Genome polyprotein (Fragment), RNA (5'-R(P*UP*UP*UP*UP*U)-3') Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-01-24 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (2.41 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPZ	Crystal structure of a tailspike depolymerase (APK16_gp47) from Acinetobacter phage APK16 Descriptor: GLYCEROL, Tailspike depolymerase (APK16_gp47) from Acinetobacter phage APK16 Authors: Matyuta, I.O, Boyko, K.M, Nikolaeva, A.Y, Shneider, M.M, Timoshina, O.Y, Miroshnikov, K.A, Popov, V.O. Deposit date: 2023-04-10 Release date: 2023-05-31 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Friunavirus Phage-Encoded Depolymerases Specific to Different Capsular Types of Acinetobacter baumannii . Int J Mol Sci, 24, 2023
8OQ1	Crystal structure of tailspike depolymerase (APK14_gp49) from Acinetobacter phage vB_AbaP_APK14 Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... Authors: Matyuta, I.O, Boyko, K.M, Nikolaeva, A.Y, Shneider, M.M, Timoshina, O.Y, Miroshnikov, K.A, Popov, V.O. Deposit date: 2023-04-10 Release date: 2023-06-07 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Friunavirus Phage-Encoded Depolymerases Specific to Different Capsular Types of Acinetobacter baumannii. Int J Mol Sci, 24, 2023
8ORK	cyclic 2,3-diphosphoglycerate synthetase from the hyperthermophilic archaeon Methanothermus fervidus Descriptor: 1,2-ETHANEDIOL, 3[N-MORPHOLINO]PROPANE SULFONIC ACID, CHLORIDE ION, ... Authors: De Rose, S.A, Isupov, M. Deposit date: 2023-04-14 Release date: 2023-12-06 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.64 Å) Cite: Structural characterization of a novel cyclic 2,3-diphosphoglycerate synthetase involved in extremolyte production in the archaeon Methanothermus fervidus . Front Microbiol, 14, 2023
8ORO	CRYSTAL STRUCTURE OF THE COFACTOR-DEVOID 1-H-3-HYDROXY-4- OXOQUINALDINE 2,4-DIOXYGENASE (HOD) S101A VARIANT COMPLEXED WITH 2-METHYL-QUINOLIN-4(1H)-ONE UNDER HYPEROXYC CONDITIONS Descriptor: 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase, 2-methyl-quinolin-4(1H)-one, D(-)-TARTARIC ACID, ... Authors: Bui, S, Steiner, R.A. Deposit date: 2023-04-15 Release date: 2024-01-17 Method: X-RAY DIFFRACTION (2 Å) Cite: Evolutionary adaptation from hydrolytic to oxygenolytic catalysis at the alpha / beta-hydrolase fold. Chem Sci, 14, 2023

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