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PDB形式変換不可の PDB エントリー
8AOZ
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ForT Mutant L24A
分子名称: 1,2-ETHANEDIOL, 4-azanyl-3-[(2~{S},3~{R},4~{S},5~{R})-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)oxolan-2-yl]-1~{H}-pyrazole-5-carboxylic acid, Beta-ribofuranosylaminobenzene 5'-phosphate synthase, ...
著者Li, W, Naismith, J.H.
登録日2022-08-09
公開日2022-09-07
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Experimental and computational snapshots of C-C bond formation in a C-nucleoside synthase.
Open Biology, 13, 2023
8AP0
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ForT Mutant T138V
分子名称: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, 4-azanyl-1~{H}-pyrazole-3,5-dicarboxylic acid, Beta-ribofuranosylaminobenzene 5'-phosphate synthase, ...
著者Li, W, Naismith, J.H.
登録日2022-08-09
公開日2022-09-07
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Experimental and computational snapshots of C-C bond formation in a C-nucleoside synthase.
Open Biology, 13, 2023
8AP6
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Trypanosoma brucei mitochondrial F1Fo ATP synthase dimer
分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, 2-{[(4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25R)-spirost-5-en-3-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranoside, ...
著者Muehleip, A, Gahura, O, Zikova, A, Amunts, A.
登録日2022-08-09
公開日2022-12-07
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献An ancestral interaction module promotes oligomerization in divergent mitochondrial ATP synthases.
Nat Commun, 13, 2022
8APA
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rotational state 1a of the Trypanosoma brucei mitochondrial ATP synthase dimer
分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, 2-{[(4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25R)-spirost-5-en-3-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranoside, ...
著者Muehleip, A, Gahura, O, Zikova, A, Amunts, A.
登録日2022-08-09
公開日2022-10-26
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献An ancestral interaction module promotes oligomerization in divergent mitochondrial ATP synthases.
Nat Commun, 13, 2022
8APB
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rotational state 1b of the Trypanosoma brucei mitochondrial ATP synthase dimer
分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, 2-{[(4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25R)-spirost-5-en-3-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranoside, ...
著者Muehleip, A, Gahura, O, Zikova, A, Amunts, A.
登録日2022-08-09
公開日2022-10-26
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献An ancestral interaction module promotes oligomerization in divergent mitochondrial ATP synthases.
Nat Commun, 13, 2022
8APC
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rotational state 1c of the Trypanosoma brucei mitochondrial ATP synthase dimer
分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, 2-{[(4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25R)-spirost-5-en-3-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranoside, ...
著者Muehleip, A, Gahura, O, Zikova, A, Amunts, A.
登録日2022-08-09
公開日2022-10-26
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献An ancestral interaction module promotes oligomerization in divergent mitochondrial ATP synthases.
Nat Commun, 13, 2022
8APD
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rotational state 1d of the Trypanosoma brucei mitochondrial ATP synthase dimer
分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, 2-{[(4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25R)-spirost-5-en-3-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranoside, ...
著者Muehleip, A, Gahura, O, Zikova, A, Amunts, A.
登録日2022-08-09
公開日2022-10-26
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献An ancestral interaction module promotes oligomerization in divergent mitochondrial ATP synthases.
Nat Commun, 13, 2022
8APE
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BU of 8ape by Molmil
rotational state 1e of the Trypanosoma brucei mitochondrial ATP synthase dimer
分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, 2-{[(4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25R)-spirost-5-en-3-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranoside, ...
著者Muehleip, A, Gahura, O, Zikova, A, Amunts, A.
登録日2022-08-09
公開日2022-10-26
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献An ancestral interaction module promotes oligomerization in divergent mitochondrial ATP synthases.
Nat Commun, 13, 2022
8APF
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rotational state 2a of the Trypanosoma brucei mitochondrial ATP synthase dimer
分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, 2-{[(4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25R)-spirost-5-en-3-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranoside, ...
著者Muehleip, A, Gahura, O, Zikova, A, Amunts, A.
登録日2022-08-09
公開日2022-10-26
実験手法ELECTRON MICROSCOPY (4.3 Å)
主引用文献An ancestral interaction module promotes oligomerization in divergent mitochondrial ATP synthases.
Nat Commun, 13, 2022
8APG
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rotational state 2b of the Trypanosoma brucei mitochondrial ATP synthase dimer
分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, 2-{[(4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25R)-spirost-5-en-3-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranoside, ...
著者Muehleip, A, Gahura, O, Zikova, A, Amunts, A.
登録日2022-08-09
公開日2022-10-26
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献An ancestral interaction module promotes oligomerization in divergent mitochondrial ATP synthases.
Nat Commun, 13, 2022
8APH
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BU of 8aph by Molmil
rotational state 2c of the Trypanosoma brucei mitochondrial ATP synthase dimer
分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, 2-{[(4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25R)-spirost-5-en-3-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranoside, ...
著者Muehleip, A, Gahura, O, Zikova, A, Amunts, A.
登録日2022-08-09
公開日2022-10-26
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献An ancestral interaction module promotes oligomerization in divergent mitochondrial ATP synthases.
Nat Commun, 13, 2022
8APJ
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rotational state 2d of Trypanosoma brucei mitochondrial ATP synthase
分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, 2-{[(4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25R)-spirost-5-en-3-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranoside, ...
著者Muehleip, A, Gahura, O, Zikova, A, Amunts, A.
登録日2022-08-09
公開日2022-10-26
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献An ancestral interaction module promotes oligomerization in divergent mitochondrial ATP synthases.
Nat Commun, 13, 2022
8APK
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BU of 8apk by Molmil
rotational state 3 of the Trypanosoma brucei mitochondrial ATP synthase dimer
分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, 2-{[(4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25R)-spirost-5-en-3-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranoside, ...
著者Muehleip, A, Gahura, O, Zikova, A, Amunts, A.
登録日2022-08-09
公開日2022-10-26
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献An ancestral interaction module promotes oligomerization in divergent mitochondrial ATP synthases.
Nat Commun, 13, 2022
8APN
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Structure of the mitochondrial ribosome from Polytomella magna with tRNA bound to the P site
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Hypothetical protein, MAGNESIUM ION, ...
著者Tobiasson, V, Berzina, I, Amunts, A.
登録日2022-08-10
公開日2022-11-16
最終更新日2023-01-18
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structure of a mitochondrial ribosome with fragmented rRNA in complex with membrane-targeting elements.
Nat Commun, 13, 2022
8APO
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Structure of the mitochondrial ribosome from Polytomella magna with tRNAs bound to the A and P sites
分子名称: A-site tRNA anticodon loop, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Tobiasson, V, Berzina, I, Amunts, A.
登録日2022-08-10
公開日2023-06-21
最終更新日2024-01-10
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Structure of a mitochondrial ribosome with fragmented rRNA in complex with membrane-targeting elements.
Nat Commun, 13, 2022
8AQ8
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BU of 8aq8 by Molmil
FAD-dependent monooxygenase from Stenotrophomonas maltophilia
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
著者Maly, M, Kolenko, P, Duskova, J, Skalova, T, Dohnalek, J.
登録日2022-08-11
公開日2023-07-12
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Tetracycline-modifying enzyme SmTetX from Stenotrophomonas maltophilia.
Acta Crystallogr.,Sect.F, 79, 2023
8ASH
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BU of 8ash by Molmil
Crystal structure of d(CCGGGGTACCCCGG) with XRB
分子名称: 4-[(~{E})-(3,6-dimethyl-1,3-benzothiazol-2-yl)iminomethyl]-~{N},~{N}-dimethyl-aniline, DNA (5'-D(*CP*CP*GP*GP*GP*GP*TP*AP*CP*CP*CP*CP*GP*G)-3')
著者Sbirkova-Dimitrova, H.I, Shivachev, B.L, Rusev, R, Kuvandjiev, N, Heroux, A, Doukov, T.
登録日2022-08-19
公開日2023-01-18
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.837 Å)
主引用文献Structural Characterization of Alzheimer DNA Promoter Sequences from the Amyloid Precursor Gene in the Presence of Thioflavin T and Analogs
Crystals, 12, 2022
8ASK
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Crystal structure of d(GCCCACCACGGC)
分子名称: DNA (5'-D(P*GP*CP*CP*CP*AP*CP*CP*AP*CP*GP*GP*C)-3'), DNA (5'-D(P*GP*CP*CP*GP*TP*GP*GP*TP*GP*GP*GP*C)-3')
著者Sbirkova-Dimitrova, H.I, Shivachev, B.L, Rusev, R, Heroux, A, Doukov, T, Kuvandjiev, N.
登録日2022-08-19
公開日2023-01-18
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.955 Å)
主引用文献Structural Characterization of Alzheimer DNA Promoter Sequences from the Amyloid Precursor Gene in the Presence of Thioflavin T and Analogs
Crystals, 12, 2022
8ATB
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Discovery of IRAK4 Inhibitor 16
分子名称: GLYCEROL, Interleukin-1 receptor-associated kinase 4, ~{N}-[6-ethoxy-2-[2-(4-methylpiperazin-1-yl)-2-oxidanylidene-ethyl]indazol-5-yl]-6-(trifluoromethyl)pyridine-2-carboxamide
著者Schafer, M, Bothe, U, Schmidt, N, Gunther, J, Nubbemeyer, R, Siebeneicher, H, Ring, S, Boemer, U, Peters, M, Denner, K, Himmel, H, Sutter, A, Terebesi, I, Lange, M, Wenger, A.M, Guimond, N, Thaler, T, Platzek, J, Eberspaecher, U, Steuber, H, Steinmeyer, A, Zollner, T.M.
登録日2022-08-22
公開日2023-11-29
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Discovery of IRAK4 Inhibitors BAY1834845 (Zabedosertib) and BAY1830839 .
J.Med.Chem., 67, 2024
8ATJ
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Crystal Structure of Shank2-SAM domain
分子名称: CHLORIDE ION, FORMIC ACID, Isoform 4 of SH3 and multiple ankyrin repeat domains protein 2, ...
著者Bento, I, Gracia Alai, M, Kreienkamp, J.-H.
登録日2022-08-23
公開日2022-11-30
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.117 Å)
主引用文献Structural deficits in key domains of Shank2 lead to alterations in postsynaptic nanoclusters and to a neurodevelopmental disorder in humans.
Mol Psychiatry, 2022
8ATL
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BU of 8atl by Molmil
Discovery of IRAK4 Inhibitor 23
分子名称: Interleukin-1 receptor-associated kinase 4, ~{N}-[6-methoxy-2-(2-morpholin-4-yl-2-oxidanylidene-ethyl)indazol-5-yl]-6-[(1~{R})-2,2,2-tris(fluoranyl)-1-oxidanyl-ethyl]pyridine-2-carboxamide
著者Schafer, M, Bothe, U, Schmidt, N, Gunther, J, Nubbemeyer, R, Siebeneicher, H, Ring, S, Boemer, U, Peters, M, Denner, K, Himmel, H, Sutter, A, Terebesi, I, Lange, M, Wenger, A.M, Guimond, N, Thaler, T, Platzek, J, Eberspaecher, U, Steuber, H, Steinmeyer, A, Zollner, T.M.
登録日2022-08-23
公開日2023-09-06
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.464 Å)
主引用文献Discovery of IRAK4 Inhibitors BAY1834845 (Zabedosertib) and BAY1830839 .
J.Med.Chem., 67, 2024
8ATM
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Structure of the giant inhibitor of apoptosis, BIRC6 (composite map)
分子名称: Baculoviral IAP repeat-containing protein 6
著者Dietz, L, Elliott, P.R.
登録日2022-08-23
公開日2023-03-08
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structural basis for SMAC-mediated antagonism of caspase inhibition by the giant ubiquitin ligase BIRC6.
Science, 379, 2023
8ATN
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Discovery of IRAK4 Inhibitor 38
分子名称: Interleukin-1 receptor-associated kinase 4, ~{N}-[3-methyl-2-(3-methyl-3-oxidanyl-butyl)-6-(2-oxidanylpropan-2-yl)benzimidazol-5-yl]-6-(trifluoromethyl)pyridine-2-carboxamide
著者Schafer, M, Bothe, U, Schmidt, N, Gunther, J, Nubbemeyer, R, Siebeneicher, H, Ring, S, Boemer, U, Peters, M, Denner, K, Himmel, H, Sutter, A, Terebesi, I, Lange, M, Wenger, A.M, Guimond, N, Thaler, T, Platzek, J, Eberspaecher, U, Steuber, H, Steinmeyer, A, Zollner, T.M.
登録日2022-08-23
公開日2023-09-06
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.171 Å)
主引用文献Discovery of IRAK4 Inhibitors BAY1834845 (Zabedosertib) and BAY1830839 .
J.Med.Chem., 67, 2024
8ATO
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BU of 8ato by Molmil
Structure of the giant inhibitor of apoptosis, BIRC6 bound to the regulator SMAC
分子名称: Baculoviral IAP repeat-containing protein 6, Diablo IAP-binding mitochondrial protein
著者Dietz, L, Elliott, P.R.
登録日2022-08-23
公開日2023-03-08
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Structural basis for SMAC-mediated antagonism of caspase inhibition by the giant ubiquitin ligase BIRC6.
Science, 379, 2023
8ATU
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Cryo-EM structure of human BIRC6
分子名称: Baculoviral IAP repeat-containing protein 6, ZINC ION
著者Ehrmann, J.F, Grabarczyk, D.B, Clausen, T.
登録日2022-08-24
公開日2023-02-15
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structural basis for regulation of apoptosis and autophagy by the BIRC6/SMAC complex.
Science, 379, 2023

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件を2024-07-31に公開中

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