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PDB形式変換不可の PDB エントリー
7VCI
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Structure of Xenopus laevis NPC nuclear ring asymmetric unit
分子名称: GATOR complex protein SEC13, MGC154553 protein, MGC83295 protein, ...
著者Tai, L, Zhu, Y, Sun, F.
登録日2021-09-03
公開日2022-02-02
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (8.1 Å)
主引用文献8 angstrom structure of the outer rings of the Xenopus laevis nuclear pore complex obtained by cryo-EM and AI.
Protein Cell, 13, 2022
7VD5
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Structure of C2S2M2-type PSII-FCPII supercomplex from diatom
分子名称: (3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol, (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, ...
著者Nagao, R, Kato, K, Akita, F, Miyazaki, N, Shen, J.R.
登録日2021-09-06
公開日2022-03-02
最終更新日2022-09-14
実験手法ELECTRON MICROSCOPY (2.5 Å)
主引用文献Structural basis for different types of hetero-tetrameric light-harvesting complexes in a diatom PSII-FCPII supercomplex
Nat Commun, 13, 2022
7VD6
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Structure of S1M1-type FCPII complex from diatom
分子名称: (3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol, (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, ...
著者Nagao, R, Kato, K, Akita, F, Miyazaki, N, Shen, J.R.
登録日2021-09-06
公開日2022-03-02
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Structural basis for different types of hetero-tetrameric light-harvesting complexes in a diatom PSII-FCPII supercomplex
Nat Commun, 13, 2022
7VEA
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Pentacylindrical allophycocyanin core from Thermosynechococcus vulcanus
分子名称: Allophycocyanin alpha chain, Allophycocyanin beta chain, PHYCOCYANOBILIN, ...
著者Kawakami, K, Hamaguchi, T, Hirose, Y, Kosumi, D, Miyata, M, Kamiya, N, Yonekura, K.
登録日2021-09-08
公開日2022-06-22
最終更新日2022-08-17
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Core and rod structures of a thermophilic cyanobacterial light-harvesting phycobilisome.
Nat Commun, 13, 2022
7VML
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Structure of recombinant RyR2 (EGTA dataset, class 1&2, closed state)
分子名称: Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine receptor 2, ZINC ION
著者Kobayashi, T, Tsutsumi, A, Kurebayashi, N, Kodama, M, Kikkawa, M, Murayama, T, Ogawa, H.
登録日2021-10-09
公開日2022-08-10
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Molecular basis for gating of cardiac ryanodine receptor explains the mechanisms for gain- and loss-of function mutations.
Nat Commun, 13, 2022
7VMM
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Structure of recombinant RyR2 (EGTA dataset, class 1, closed state)
分子名称: Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine receptor 2, ZINC ION
著者Kobayashi, T, Tsutsumi, A, Kurebayashi, N, Kodama, M, Kikkawa, M, Murayama, T, Ogawa, H.
登録日2021-10-09
公開日2022-08-10
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Molecular basis for gating of cardiac ryanodine receptor explains the mechanisms for gain- and loss-of function mutations.
Nat Commun, 13, 2022
7VMN
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Structure of recombinant RyR2 (EGTA dataset, class 2, closed state)
分子名称: Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine receptor 2, ZINC ION
著者Kobayashi, T, Tsutsumi, A, Kurebayashi, N, Kodama, M, Kikkawa, M, Murayama, T, Ogawa, H.
登録日2021-10-09
公開日2022-08-10
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Molecular basis for gating of cardiac ryanodine receptor explains the mechanisms for gain- and loss-of function mutations.
Nat Commun, 13, 2022
7VMO
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Structure of recombinant RyR2 (Ca2+ dataset, class 1, open state)
分子名称: CALCIUM ION, Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine receptor 2, ...
著者Kobayashi, T, Tsutsumi, A, Kurebayashi, N, Kodama, M, Kikkawa, M, Murayama, T, Ogawa, H.
登録日2021-10-09
公開日2022-08-10
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Molecular basis for gating of cardiac ryanodine receptor explains the mechanisms for gain- and loss-of function mutations.
Nat Commun, 13, 2022
7VMP
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Structure of recombinant RyR2 (Ca2+ dataset, class 2, open state)
分子名称: CALCIUM ION, Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine receptor 2, ...
著者Kobayashi, T, Tsutsumi, A, Kurebayashi, N, Kodama, M, Kikkawa, M, Murayama, T, Ogawa, H.
登録日2021-10-09
公開日2022-08-10
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Molecular basis for gating of cardiac ryanodine receptor explains the mechanisms for gain- and loss-of function mutations.
Nat Commun, 13, 2022
7VMQ
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Structure of recombinant RyR2 (Ca2+ dataset, class 3, open state)
分子名称: CALCIUM ION, Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine receptor 2, ...
著者Kobayashi, T, Tsutsumi, A, Kurebayashi, N, Kodama, M, Kikkawa, M, Murayama, T, Ogawa, H.
登録日2021-10-09
公開日2022-08-10
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Molecular basis for gating of cardiac ryanodine receptor explains the mechanisms for gain- and loss-of function mutations
Nat Commun, 13, 2022
7VMR
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Structure of recombinant RyR2 mutant K4593A (EGTA dataset)
分子名称: Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine receptor 2, ZINC ION
著者Kobayashi, T, Tsutsumi, A, Kurebayashi, N, Kodama, M, Kikkawa, M, Murayama, T, Ogawa, H.
登録日2021-10-09
公開日2022-08-10
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Molecular basis for gating of cardiac ryanodine receptor explains the mechanisms for gain- and loss-of function mutations.
Nat Commun, 13, 2022
7VMS
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Structure of recombinant RyR2 mutant K4593A (Ca2+ dataset)
分子名称: CALCIUM ION, Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine receptor 2, ...
著者Kobayashi, T, Tsutsumi, A, Kurebayashi, N, Kodama, M, Kikkawa, M, Murayama, T, Ogawa, H.
登録日2021-10-09
公開日2022-08-10
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Molecular basis for gating of cardiac ryanodine receptor explains the mechanisms for gain- and loss-of function mutations
Nat Commun, 13, 2022
7VOP
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Cryo-EM structure of Xenopus laevis nuclear pore complex cytoplasmic ring subunit
分子名称: GATOR complex protein SEC13, IL4I1 protein, MGC154553 protein, ...
著者Tai, L, Zhu, Y, Sun, F.
登録日2021-10-14
公開日2022-02-02
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (8.7 Å)
主引用文献8 angstrom structure of the outer rings of the Xenopus laevis nuclear pore complex obtained by cryo-EM and AI.
Protein Cell, 13, 2022
7VOR
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BU of 7vor by Molmil
The structure of dimeric photosynthetic RC-LH1 supercomplex in Class-1
分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, ...
著者Cao, P, Li, M, Liu, L.N.
登録日2021-10-14
公開日2022-04-27
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (2.74 Å)
主引用文献Structural basis for the assembly and quinone transport mechanisms of the dimeric photosynthetic RC-LH1 supercomplex.
Nat Commun, 13, 2022
7VOT
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The structure of dimeric photosynthetic RC-LH1 supercomplex in Class-2
分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN B, ...
著者Cao, P, Li, M, Liu, L.N.
登録日2021-10-14
公開日2022-04-27
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Structural basis for the assembly and quinone transport mechanisms of the dimeric photosynthetic RC-LH1 supercomplex.
Nat Commun, 13, 2022
7VRT
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The unexpanded head structure of phage T4
分子名称: Capsid vertex protein, Major capsid protein
著者Fang, Q, Tang, W, Fokine, A, Mahalingam, M, Shao, Q, Rossmann, M.G, Rao, V.B.
登録日2021-10-24
公開日2022-10-05
最終更新日2024-06-26
実験手法ELECTRON MICROSCOPY (5.1 Å)
主引用文献Structures of a large prolate virus capsid in unexpanded and expanded states generate insights into the icosahedral virus assembly.
Proc.Natl.Acad.Sci.USA, 119, 2022
7VS5
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The expanded head structure of phage T4
分子名称: Capsid vertex protein, Major capsid protein, Small outer capsid protein
著者Fang, Q, Tang, W, Fokine, A, Mahalingam, M, Shao, Q, Rossmann, M.G, Rao, V.B.
登録日2021-10-25
公開日2022-10-05
最終更新日2024-06-26
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structures of a large prolate virus capsid in unexpanded and expanded states generate insights into the icosahedral virus assembly.
Proc.Natl.Acad.Sci.USA, 119, 2022
7VU9
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Pholiota squarrosa lectin (PhoSL) in complex with fucose(alpha1-6)[GlcNAc(beta1-4)]GlcNAc
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, FORMIC ACID, Lectin (PhoSL)
著者Yamasaki, K, Yamasaki, T, Kubota, T.
登録日2021-11-01
公開日2022-10-12
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.154 Å)
主引用文献Core fucose-specific Pholiota squarrosa lectin (PhoSL) as a potent broad-spectrum inhibitor of SARS-CoV-2 infection.
Febs J., 290, 2023
7VUB
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Phloem lectin (PP2) complex with Nitrobenzene
分子名称: 1,2-ETHANEDIOL, NITROBENZENE, Phloem lectin
著者Sivaji, N, Bobbili, K.B, Suguna, K, Surolia, A.
登録日2021-11-02
公開日2023-03-08
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Structure and interactions of the phloem lectin (phloem protein 2) Cus17 from Cucumis sativus.
Structure, 31, 2023
7VUL
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Structure of Klebsiella Phage P560 depolymerase
分子名称: Non-contractile tail fiber protein, SULFATE ION
著者Li, M, Chen, R, Zhang, S, Zhang, W.
登録日2021-11-02
公開日2022-11-16
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.59 Å)
主引用文献Structure of Klebsiella Phage P560 depolymerase
To Be Published
7VUM
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Crystal structure of SSB complexed with que
分子名称: 3,5,7,3',4'-PENTAHYDROXYFLAVONE, Single-stranded DNA-binding protein
著者Lin, E.S, Huang, Y.H, Huang, C.Y.
登録日2021-11-03
公開日2022-03-09
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.319 Å)
主引用文献A Complexed Crystal Structure of a Single-Stranded DNA-Binding Protein with Quercetin and the Structural Basis of Flavonol Inhibition Specificity.
Int J Mol Sci, 23, 2022
7VW7
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Crystal structure of the 2 ADP-AlF4-bound V1 complex
分子名称: ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, MAGNESIUM ION, ...
著者Suzuki, K, Shekhar, M, Gupta, C, Singharoy, A, Murata, T.
登録日2021-11-09
公開日2022-06-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.818 Å)
主引用文献Revealing a Hidden Intermediate of Rotatory Catalysis with X-ray Crystallography and Molecular Simulations.
Acs Cent.Sci., 8, 2022
7VWY
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Cryo-EM structure of Rob-dependent transcription activation complex in a unique conformation
分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
著者Lin, W, Feng, Y.
登録日2021-11-12
公開日2022-06-08
最終更新日2024-06-26
実験手法ELECTRON MICROSCOPY (4.57 Å)
主引用文献Structural basis of transcription activation by Rob, a pleiotropic AraC/XylS family regulator.
Nucleic Acids Res., 50, 2022
7VY2
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STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF RHODOBACTER SPHAEROIDES DIMER
分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, Antenna pigment protein alpha chain, Antenna pigment protein beta chain, ...
著者Tani, K, Kanno, R, Kawamura, S, Kikuchi, R, Nagashima, K.V.P, Hall, M, Takahashi, A, Yu, L.-J, Kimura, Y, Madigan, M.T, Mizoguchi, A, Humbel, B.M, Wang-Otomo, Z.-Y.
登録日2021-11-13
公開日2022-04-27
実験手法ELECTRON MICROSCOPY (2.75 Å)
主引用文献Asymmetric structure of the native Rhodobacter sphaeroides dimeric LH1-RC complex.
Nat Commun, 13, 2022
7VYV
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Cryo-EM structure of Depo32, a Klebsiella phage depolymerase targets the K2 serotype K. pneumoniae
分子名称: Depolymerase
著者Cai, R, Ren, Z, Zhao, R, Wang, X, Guo, Z, Du, R, Han, W, Ru, H, Gu, J.
登録日2021-11-15
公開日2023-08-30
実験手法ELECTRON MICROSCOPY (2.32 Å)
主引用文献Depo32, a depolymerase of Klebsiella phage, efficiently controls infection caused by Klebsiella pneumoniae with K2 serotype CPS
To Be Published

222415

件を2024-07-10に公開中

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