PDB形式変換不可の PDB エントリー

7SQT	Goslar chimallin cubic (O, 24mer) assembly 分子名称: Chimallin 著者 Laughlin, T.G, Deep, A, Prichard, A.M, Seitz, C, Gu, Y, Enustun, E, Suslov, S, Khanna, K, Birkholz, E.A, Amaro, R.E, Pogliano, J, Corbett, K.D, Villa, E. 登録日 2021-11-06 公開日 2022-07-27 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Architecture and self-assembly of the jumbo bacteriophage nuclear shell. Nature, 608, 2022
7SS9	Late translocation intermediate with EF-G partially dissociated (Structure V) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Carbone, C.E, Loveland, A.B, Gamper, H.B, Hou, Y, Korostelev, A.A. 登録日 2021-11-10 公開日 2022-02-23 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP. Nat Commun, 12, 2021
7SSD	Mid translocation intermediate with EF-G bound with GDP (Structure IV) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Carbone, C.E, Korostelev, A.A. 登録日 2021-11-10 公開日 2022-02-23 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP. Nat Commun, 12, 2021
7SSH	Single chain trimer HLA-A*02:01 (Y108A) with HPV.16 E7 peptide YMLDLQPETTDLYC 分子名称: Protein E7 peptide,Beta-2-microglobulin,MHC class I antigen chimera, VHH 著者 Finton, K.A.K, Rupert, P.B. 登録日 2021-11-11 公開日 2022-11-23 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.73 Å) 主引用文献 Effects of HLA single chain trimer design on peptide presentation and stability. Front Immunol, 14, 2023
7SSL	Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Carbone, C.E, Korostelev, A.A. 登録日 2021-11-11 公開日 2022-02-23 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP. Nat Commun, 12, 2021
7SSN	Pre translocation 70S ribosome with A/P* and P/E tRNA (Structure II-B) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Carbone, C.E, Korostelev, A.A. 登録日 2021-11-11 公開日 2022-02-23 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP. Nat Commun, 12, 2021
7SSO	Pre translocation 70S ribosome with A/A and P/E tRNA (Structure II-A) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Carbone, C.E, Korostelev, A.A. 登録日 2021-11-11 公開日 2022-02-23 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP. Nat Commun, 12, 2021
7SSW	Late translocation intermediate with EF-G dissociated (Structure VI) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Carbone, C.E, Korostelev, A.A. 登録日 2021-11-11 公開日 2022-02-23 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP. Nat Commun, 12, 2021
7ST2	Post translocation, non-rotated 70S ribosome with EF-G dissociated (Structure VII) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Carbone, C.E, Korostelev, A.A. 登録日 2021-11-11 公開日 2022-02-23 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP. Nat Commun, 12, 2021
7ST3	Consequences of HLA single chain trimer mutations on peptide presentation and binding affinity 分子名称: Protein E7 peptide,Beta-2-microglobulin,MHC class I antigen chimera, VHH 著者 Finton, K.A.K, Rupert, P.B. 登録日 2021-11-11 公開日 2022-11-23 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.78 Å) 主引用文献 Effects of HLA single chain trimer design on peptide presentation and stability. Front Immunol, 14, 2023
7ST6	Pre translocation, non-rotated 70S ribosome (Structure I) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Carbone, C.E, Korostelev, A.A. 登録日 2021-11-12 公開日 2022-02-23 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP. Nat Commun, 12, 2021
7ST7	Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Carbone, C.E, Korostelev, A.A. 登録日 2021-11-12 公開日 2022-02-23 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP. Nat Commun, 12, 2021
7STG	Consequences of HLA single chain trimer mutations on peptide presentation and binding affinity 分子名称: RPA-related protein RADX peptide,Beta-2-microglobulin,MHC class I antigen chimera, VHH 著者 Finton, K.A.K, Rupert, P.B. 登録日 2021-11-12 公開日 2022-11-23 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Effects of HLA single chain trimer design on peptide presentation and stability. Front Immunol, 14, 2023
7SU4	Dihydroneopterin aldolase (DHNA) Tyr53Phe from Yersinia pestis co-crystallized with 7,8-dihydroneopterin 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-AMINO-7,8-DIHYDRO-6-(1,2,3-TRIHYDROXYPROPYL)-4(1H)-PTERIDINONE, 7,8-dihydroneopterin aldolase, ... 著者 Bourne, C.R. 登録日 2021-11-16 公開日 2022-12-28 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.78 Å) 主引用文献 Dihydroneopterin aldolase (DHNA) Tyr53Phe from Yersinia pestis co-crystallized with 7,8-dihydroneopterin To Be Published
7SU7	Dihydroneopterin aldolase (DHNA) from Yersinia pestis co-crystallized with product 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-AMINO-6-HYDROXYMETHYL-7,8-DIHYDRO-3H-PTERIDIN-4-ONE, ... 著者 Bourne, C.R. 登録日 2021-11-16 公開日 2022-12-28 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.09 Å) 主引用文献 Dihydroneopterin aldolase (DHNA) from Yersinia pestis co-crystallized with product To Be Published
7SUK	Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells 分子名称: 18S pre-rRNA, 40S ribosomal protein S11-A, 40S ribosomal protein S13, ... 著者 Rai, J, Zhao, Y, Li, H. 登録日 2021-11-17 公開日 2022-07-06 最終更新日 2023-08-16 実験手法 ELECTRON MICROSCOPY (3.99 Å) 主引用文献 Artificial intelligence-assisted cryoEM structure of Bfr2-Lcp5 complex observed in the yeast small subunit processome. Commun Biol, 5, 2022
7SXN	Orb2A residues 1-9 MYNKFVNFI 分子名称: Orb2A residues 1-9 MYNKFVNFI 著者 Bowler, J.T, Sawaya, M.R, Boyer, D.R, Cascio, D, Eisenberg, D.S. 登録日 2021-11-23 公開日 2022-10-05 最終更新日 2024-05-22 実験手法 ELECTRON CRYSTALLOGRAPHY (1.05 Å) 主引用文献 Micro-electron diffraction structure of the aggregation-driving N terminus of Drosophila neuronal protein Orb2A reveals amyloid-like beta-sheets. J.Biol.Chem., 298, 2022
7SXR	Cryo-EM structure of the SARS-CoV-2 D614G mutant spike protein ectodomain 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein 著者 Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Kim, A, Li, W, Dimitrov, D.S, Subramaniam, S. 登録日 2021-11-24 公開日 2021-12-29 最終更新日 2022-01-05 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structural analysis of receptor binding domain mutations in SARS-CoV-2 variants of concern that modulate ACE2 and antibody binding. Cell Rep, 37, 2021
7SXX	Cryo-EM structure of the SARS-CoV-2 D614G mutant spike protein ectodomain bound to human ACE2 ectodomain (global refinement) 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ... 著者 Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Kim, A, Li, W, Dimitrov, D.S, Subramaniam, S. 登録日 2021-11-24 公開日 2021-12-29 最終更新日 2022-01-05 実験手法 ELECTRON MICROSCOPY (2.66 Å) 主引用文献 Structural analysis of receptor binding domain mutations in SARS-CoV-2 variants of concern that modulate ACE2 and antibody binding. Cell Rep, 37, 2021
7SXZ	Cryo-EM structure of the SARS-CoV-2 D614G,L452R mutant spike protein ectodomain bound to human ACE2 ectodomain (global refinement) 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ... 著者 Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Kim, A, Li, W, Dimitrov, D.S, Subramaniam, S. 登録日 2021-11-24 公開日 2021-12-29 最終更新日 2022-01-05 実験手法 ELECTRON MICROSCOPY (2.61 Å) 主引用文献 Structural analysis of receptor binding domain mutations in SARS-CoV-2 variants of concern that modulate ACE2 and antibody binding. Cell Rep, 37, 2021
7SY1	Cryo-EM structure of the SARS-CoV-2 D614G,N501Y mutant spike protein ectodomain bound to human ACE2 ectodomain (global refinement) 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ... 著者 Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Kim, A, Li, W, Dimitrov, D.S, Subramaniam, S. 登録日 2021-11-24 公開日 2021-12-29 最終更新日 2022-01-05 実験手法 ELECTRON MICROSCOPY (2.83 Å) 主引用文献 Structural analysis of receptor binding domain mutations in SARS-CoV-2 variants of concern that modulate ACE2 and antibody binding. Cell Rep, 37, 2021
7SY7	Cryo-EM structure of the SARS-CoV-2 D614G,N501Y,E484K,K417T mutant spike protein ectodomain bound to human ACE2 ectodomain (global refinement) 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ... 著者 Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Kim, A, Li, W, Dimitrov, D.S, Subramaniam, S. 登録日 2021-11-24 公開日 2021-12-29 実験手法 ELECTRON MICROSCOPY (2.81 Å) 主引用文献 Structural analysis of receptor binding domain mutations in SARS-CoV-2 variants of concern that modulate ACE2 and antibody binding. Cell Rep, 37, 2021
7T0W	Complex of GABA-A synaptic receptor with autoimmune antibody Fab115 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab115 Heavy Chain, IgG1, ... 著者 Noviello, C.M, Hibbs, R.E, Kreye, J, Teng, J, Pruss, H. 登録日 2021-11-30 公開日 2022-07-13 最終更新日 2022-07-20 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structural mechanisms of GABA A receptor autoimmune encephalitis. Cell, 185, 2022
7T0Z	Complex of GABA-A synaptic receptor with autoimmune antibody Fab175 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab175 IgG1 heavy chain, ... 著者 Noviello, C.M, Hibbs, R.E, Kreye, J, Teng, J, Pruss, H. 登録日 2021-11-30 公開日 2022-07-13 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structural mechanisms of GABA A receptor autoimmune encephalitis. Cell, 185, 2022
7T1W	Crystal structure of human Fab A194-01 in complex with its synthetic tetrasaccharide Ara4 epitope (BSI110886) 分子名称: 1,2-ETHANEDIOL, CITRIC ACID, Fab A194-01 heavy chain, ... 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2021-12-02 公開日 2022-12-07 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 Crystal structure of human Fab A194-01 in complex with its synthetic tetrasaccharide Ara4 epitope (BSI110886) to be published

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