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PDB形式変換不可の PDB エントリー
7PJW
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BU of 7pjw by Molmil
Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G-GDP-Pi)
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Petrychenko, V, Peng, B.Z, Schwarzer, A.C, Peske, F, Rodnina, M.V, Fischer, N.
登録日2021-08-24
公開日2021-10-20
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Structural mechanism of GTPase-powered ribosome-tRNA movement.
Nat Commun, 12, 2021
7PJX
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Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP)
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Petrychenko, V, Peng, B.Z, Schwarzer, A.C, Peske, F, Rodnina, M.V, Fischer, N.
登録日2021-08-24
公開日2021-10-20
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (6.5 Å)
主引用文献Structural mechanism of GTPase-powered ribosome-tRNA movement.
Nat Commun, 12, 2021
7PJY
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BU of 7pjy by Molmil
Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 1 (CHI1-EF-G-GDP)
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Petrychenko, V, Peng, B.Z, Schwarzer, A.C, Peske, F, Rodnina, M.V, Fischer, N.
登録日2021-08-24
公開日2021-10-20
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structural mechanism of GTPase-powered ribosome-tRNA movement.
Nat Commun, 12, 2021
7PJZ
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BU of 7pjz by Molmil
Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 2 (CHI2-EF-G-GDP)
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Petrychenko, V, Peng, B.Z, Schwarzer, A.C, Peske, F, Rodnina, M.V, Fischer, N.
登録日2021-08-24
公開日2021-10-20
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (6 Å)
主引用文献Structural mechanism of GTPase-powered ribosome-tRNA movement.
Nat Commun, 12, 2021
7PK6
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Providencia stuartii Arginine decarboxylase (Adc), stack structure
分子名称: Biodegradative arginine decarboxylase
著者Jessop, M, Desfosses, A, Bacia-Verloop, M, Gutsche, I.
登録日2021-08-25
公開日2022-04-20
実験手法ELECTRON MICROSCOPY (2.15 Å)
主引用文献Structural and biochemical characterisation of the Providencia stuartii arginine decarboxylase shows distinct polymerisation and regulation.
Commun Biol, 5, 2022
7PKC
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BU of 7pkc by Molmil
Streptococcus pyogenes Apo-GapN C284S variant
分子名称: GLYCEROL, Putative NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, SULFATE ION
著者Schindelin, H, Albert, L.
登録日2021-08-25
公開日2022-03-16
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献The Non-phosphorylating Glyceraldehyde-3-Phosphate Dehydrogenase GapN Is a Potential New Drug Target in Streptococcus pyogenes.
Front Microbiol, 13, 2022
7PKR
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BU of 7pkr by Molmil
Vault structure in primmed conformation
分子名称: Major vault protein
著者Guerra, P, Gonzalez-Alamos, M, Llauro, A, Casanas, A, Querol-Audi, J, de Pablo, P, Verdaguer, N.
登録日2021-08-26
公開日2022-03-16
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Symmetry disruption commits vault particles to disassembly.
Sci Adv, 8, 2022
7PKS
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Structural basis of Integrator-mediated transcription regulation
分子名称: DNA Template, DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, ...
著者Fianu, I, Chen, Y, Dienemann, C, Cramer, P.
登録日2021-08-26
公開日2021-12-08
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Structural basis of Integrator-mediated transcription regulation.
Science, 374, 2021
7PKT
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Large subunit of the Chlamydomonas reinhardtii mitoribosome
分子名称: 50S ribosomal protein L20, 50S ribosomal protein L9, chloroplastic, ...
著者Waltz, F, Soufari, H, Hashem, Y.
登録日2021-08-26
公開日2022-06-15
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献How to build a ribosome from RNA fragments in Chlamydomonas mitochondria.
Nat Commun, 12, 2021
7PKY
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Half-vault structure
分子名称: Major vault protein
著者Guerra, P, Gonzalez-Alamos, M, Llauro, A, Casanas, A, Querol-Audi, J, de Pablo, P, Verdaguer, N.
登録日2021-08-27
公開日2022-03-23
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (7.9 Å)
主引用文献Symmetry disruption commits vault particles to disassembly.
Sci Adv, 8, 2022
7PKZ
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Vault structure in committed conformation
分子名称: Major vault protein
著者Guerra, P, Gonzalez-Alamos, M, Llauro, A, Casanas, A, Querol-Audi, J, de Pablo, P, Verdaguer, N.
登録日2021-08-27
公開日2022-03-16
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (9.8 Å)
主引用文献Symmetry disruption commits vault particles to disassembly.
Sci Adv, 8, 2022
7PL5
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BU of 7pl5 by Molmil
Crystal structure of choline-binding module (R1-R9) of LytB from Streptococcus pneumoniae
分子名称: CHOLINE ION, Putative endo-beta-N-acetylglucosaminidase, TRIETHYLENE GLYCOL, ...
著者Molina, R, Martinez Caballero, S, Hermoso, J.A.
登録日2021-08-28
公開日2022-09-07
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Molecular basis of the final step of cell division in Streptococcus pneumoniae.
Cell Rep, 42, 2023
7PLF
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BU of 7plf by Molmil
Human Carbonic Anhydrase I in complex with clorsulon
分子名称: 4-azanyl-6-[1,2,2-tris(chloranyl)ethenyl]benzene-1,3-disulfonamide, Carbonic anhydrase 1, ZINC ION
著者Angeli, A, Ferraroni, M.
登録日2021-08-31
公開日2022-09-07
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.461 Å)
主引用文献Inhibition of Schistosoma mansoni carbonic anhydrase by the antiparasitic drug clorsulon: X-ray crystallographic and in vitro studies.
Acta Crystallogr D Struct Biol, 78, 2022
7PLO
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BU of 7plo by Molmil
H. sapiens replisome-CUL2/LRR1 complex
分子名称: Cell division control protein 45 homolog, Claspin, Cullin-2, ...
著者Jones, M.J, Yeeles, J.T.P, Deegan, T.D, Jenkyn-Bedford, M.
登録日2021-09-01
公開日2021-11-10
最終更新日2023-10-18
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献A conserved mechanism for regulating replisome disassembly in eukaryotes.
Nature, 600, 2021
7PLR
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BU of 7plr by Molmil
Crystal structure of the N-terminal endonuclease domain of La Crosse virus L-protein bound to compound Baloxavir
分子名称: Baloxavir acid, FORMIC ACID, GLYCEROL, ...
著者Feracci, M, Hernandez, S, Vincentelli, R, Ferron, F, Reguera, J, Canard, B, Alvarez, K.
登録日2021-09-01
公開日2022-09-14
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.64 Å)
主引用文献Crystal structure of the N-terminal endonuclease domain of La Crosse virus L-protein bound to compound Baloxavir
To Be Published
7PMK
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BU of 7pmk by Molmil
S. cerevisiae replisome-SCF(Dia2) complex bound to double-stranded DNA (conformation I)
分子名称: Cell division control protein 45,Cell division control protein 45, Chromosome segregation in meiosis protein 3, DNA helicase, ...
著者Jenkyn-Bedford, M, Yeeles, J.T.P, Deegan, T.D.
登録日2021-09-02
公開日2021-11-10
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献A conserved mechanism for regulating replisome disassembly in eukaryotes.
Nature, 600, 2021
7PMN
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S. cerevisiae replisome-SCF(Dia2) complex bound to double-stranded DNA (conformation II)
分子名称: Cell division control protein 45,Cell division control protein 45, Chromosome segregation in meiosis protein 3, DNA polymerase alpha-binding protein, ...
著者Jenkyn-Bedford, M, Yeeles, J.T.P, Deegan, T.D.
登録日2021-09-02
公開日2021-11-10
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献A conserved mechanism for regulating replisome disassembly in eukaryotes.
Nature, 600, 2021
7PMO
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BU of 7pmo by Molmil
Ruminococcus gnavus ATC29149 endo-beta-1,4-galactosidase (RgGH98)
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
著者Owen, C.D, Wu, H, Crost, E.H, van Bakel, W, Gascuena, A.M, Latousakis, D, Hicks, T, Walpole, S, Urbanowicz, P.A, Ndeh, D, Monaco, S, Salom, L.S, Griffiths, R, Colvile, A, Spencer, D.I.R, Walsh, M.A, Angulo, J, Juge, N.
登録日2021-09-02
公開日2022-02-02
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The human gut symbiont Ruminococcus gnavus shows specificity to blood group A antigen during mucin glycan foraging: Implication for niche colonisation in the gastrointestinal tract.
Plos Biol., 19, 2021
7PMZ
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BU of 7pmz by Molmil
Crystal structure of Streptomyces coelicolor guaB (IMP dehydrogenase) bound to ATP and ppGpp at 2.0 A resolution
分子名称: ADENOSINE-5'-TRIPHOSPHATE, GUANOSINE-5',3'-TETRAPHOSPHATE, Inosine-5'-monophosphate dehydrogenase, ...
著者Fernandez-Justel, D, Revuelta, J.L, Buey, R.M.
登録日2021-09-04
公開日2022-05-11
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献Diversity of mechanisms to control bacterial GTP homeostasis by the mutually exclusive binding of adenine and guanine nucleotides to IMP dehydrogenase.
Protein Sci., 31, 2022
7PNH
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X-ray structure of the adduct formed upon reaction of Pt(II) complex 2c with lysozyme
分子名称: DIMETHYL SULFOXIDE, GLYCEROL, IMIDAZOLE, ...
著者Ferraro, G, Merlino, A.
登録日2021-09-07
公開日2021-10-27
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.22 Å)
主引用文献Reactions with Proteins of Three Novel Anticancer Platinum(II) Complexes Bearing N-Heterocyclic Ligands.
Int J Mol Sci, 22, 2021
7PNI
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X-ray structure of the adduct formed upon reaction of Pt(II) complex 2c with ribonuclease A
分子名称: PLATINUM (II) ION, Ribonuclease pancreatic
著者Ferraro, G, Merlino, A.
登録日2021-09-07
公開日2021-10-27
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.13 Å)
主引用文献Reactions with Proteins of Three Novel Anticancer Platinum(II) Complexes Bearing N-Heterocyclic Ligands.
Int J Mol Sci, 22, 2021
7PNK
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Unstacked compact Dunaliella PSII
分子名称: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL, (1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol, (2S)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate, ...
著者Caspy, I, Fadeeva, M, Mazor, Y, Nelson, N.
登録日2021-09-07
公開日2022-08-17
最終更新日2023-03-01
実験手法ELECTRON MICROSCOPY (3.61 Å)
主引用文献Structure of Dunaliella Photosystem II reveals conformational flexibility of stacked and unstacked supercomplexes.
Elife, 12, 2023
7PNT
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Assembly intermediate of mouse mitochondrial ribosome small subunit without mS37 in complex with RbfA and Tfb1m
分子名称: 12S mitochondrial rRNA, 28S ribosomal protein S10, mitochondrial, ...
著者Itoh, Y, Khawaja, A, Laptev, I, Sergiev, P, Rorbach, J, Amunts, A.
登録日2021-09-08
公開日2022-06-15
最終更新日2024-01-17
実験手法ELECTRON MICROSCOPY (3.19 Å)
主引用文献Mechanism of mitoribosomal small subunit biogenesis and preinitiation.
Nature, 606, 2022
7PNU
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Assembly intermediate of mouse mitochondrial ribosome small subunit without mS37 in complex with RbfA inward conformation
分子名称: 12S mitochondrial rRNA, 28S ribosomal protein S10, mitochondrial, ...
著者Itoh, Y, Khawaja, A, Laptev, I, Sergiev, P, Rorbach, J, Amunts, A.
登録日2021-09-08
公開日2022-06-15
最終更新日2024-01-17
実験手法ELECTRON MICROSCOPY (3.06 Å)
主引用文献Mechanism of mitoribosomal small subunit biogenesis and preinitiation.
Nature, 606, 2022
7PNV
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Assembly intermediate of mouse mitochondrial ribosome small subunit without mS37 in complex with RbfA and Mettl15
分子名称: 12S mitochondrial rRNA, 12S rRNA N4-methylcytidine methyltransferase, 28S ribosomal protein S10, ...
著者Itoh, Y, Khawaja, A, Laptev, I, Sergiev, P, Rorbach, J, Amunts, A.
登録日2021-09-08
公開日2022-06-15
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (3.06 Å)
主引用文献Mechanism of mitoribosomal small subunit biogenesis and preinitiation.
Nature, 606, 2022

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件を2024-07-31に公開中

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