PDB形式変換不可の PDB エントリー

1BOS	SHIGA-LIKE TOXIN COMPLEXED WITH ITS RECEPTOR 分子名称: SHIGA-LIKE TOXIN I B SUBUNIT, alpha-D-galactopyranose-(1-4)-beta-D-galactopyranose, alpha-D-galactopyranose-(1-4)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose, ... 著者 Ling, H, Boodhoo, A, Hazes, B, Cummings, M.D, Armstrong, G.D, Brunton, J.L, Read, R.J. 登録日 1998-01-13 公開日 1999-02-02 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structure of the shiga-like toxin I B-pentamer complexed with an analogue of its receptor Gb3. Biochemistry, 37, 1998
1VVJ	Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Maehigashi, T, Dunkle, J.A, Dunham, C.M. 登録日 2013-05-24 公開日 2014-08-06 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (3.44000111574 Å) 主引用文献 Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops. Proc.Natl.Acad.Sci.USA, 111, 2014
1VY4	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Polikanov, Y.S, Steitz, T.A, Innis, C.A. 登録日 2014-05-13 公開日 2014-08-20 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome. Nat.Struct.Mol.Biol., 21, 2014
1VY5	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Polikanov, Y.S, Steitz, T.A, Innis, C.A. 登録日 2014-05-13 公開日 2014-08-20 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome. Nat.Struct.Mol.Biol., 21, 2014
1VY6	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site. 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Polikanov, Y.S, Steitz, T.A, Innis, C.A. 登録日 2014-05-13 公開日 2014-08-20 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome. Nat.Struct.Mol.Biol., 21, 2014
1VY7	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Polikanov, Y.S, Steitz, T.A, Innis, C.A. 登録日 2014-05-13 公開日 2014-08-20 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome. Nat.Struct.Mol.Biol., 21, 2014
2BTJ	Fluorescent Protein EosFP - red form 分子名称: Green to red photoconvertible GFP-like protein EosFP 著者 Nar, H, Nienhaus, K, Wiedenmann, J, Nienhaus, G.U. 登録日 2005-06-01 公開日 2005-06-23 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural Basis for Photo-Induced Protein Cleavage and Green-to-Red Conversion of Fluorescent Protein Eosfp. Proc.Natl.Acad.Sci.USA, 102, 2005
2VVJ	IrisFP fluorescent protein in its red form, cis conformation 分子名称: Green to red photoconvertible GFP-like protein EosFP, SULFATE ION, SULFITE ION 著者 Adam, V, Lelimousin, M, Boehme, S, Desfonds, G, Nienhaus, K, Field, M.J, Wiedenmann, J, McSweeney, S, Nienhaus, G.U, Bourgeois, D. 登録日 2008-06-09 公開日 2008-08-12 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural Characterization of Irisfp, an Optical Highlighter Undergoing Multiple Photo-Induced Transformations. Proc.Natl.Acad.Sci.USA, 105, 2008
3BCR	Glycogen Phosphorylase b in complex with AZT 分子名称: 3'-azido-3'-deoxythymidine, Glycogen phosphorylase, muscle form 著者 Sovantzis, D.A, Hadjiloi, T, Hayes, J.M, Zographos, S.E, Chrysina, E.D, Oikonomakos, N.G. 登録日 2007-11-13 公開日 2008-11-18 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.14 Å) 主引用文献 D-Glucopyranosyl pyrimidine nucleoside binding to muscle glycogen phosphorylase b To be Published
3J3Q	Atomic-level structure of the entire HIV-1 capsid 分子名称: capsid protein 著者 Perilla, J.R, Zhao, G, Zhang, P, Schulten, K.J. 登録日 2013-04-12 公開日 2013-05-29 最終更新日 2018-07-18 実験手法 ELECTRON MICROSCOPY 主引用文献 Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics. Nature, 497, 2013
3J3Y	Atomic-level structure of the entire HIV-1 capsid (186 hexamers + 12 pentamers) 分子名称: capsid protein 著者 Perilla, J.R, Zhao, G, Zhang, P, Schulten, K.J. 登録日 2013-05-06 公開日 2013-05-29 最終更新日 2018-07-18 実験手法 ELECTRON MICROSCOPY 主引用文献 Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics. Nature, 497, 2013
3J6B	Structure of the yeast mitochondrial large ribosomal subunit 分子名称: 21S ribosomal RNA, 54S ribosomal protein IMG1, mitochondrial, ... 著者 Amunts, A, Brown, A, Bai, X.C, Llacer, J.L, Hussain, T, Emsley, P, Long, F, Murshudov, G, Scheres, S.H.W, Ramakrishnan, V. 登録日 2014-01-22 公開日 2014-04-09 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structure of the yeast mitochondrial large ribosomal subunit. Science, 343, 2014
3J6X	S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II) 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0, ... 著者 Koh, C.S, Brilot, A.F, Grigorieff, N, Korostelev, A.A. 登録日 2014-04-16 公開日 2014-06-11 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (6.1 Å) 主引用文献 Taura syndrome virus IRES initiates translation by binding its tRNA-mRNA-like structural element in the ribosomal decoding center. Proc.Natl.Acad.Sci.USA, 111, 2014
3J6Y	S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I) 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0, ... 著者 Koh, C.S, Brilot, A.F, Grigorieff, N, Korostelev, A.A. 登録日 2014-04-16 公開日 2014-06-11 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (6.1 Å) 主引用文献 Taura syndrome virus IRES initiates translation by binding its tRNA-mRNA-like structural element in the ribosomal decoding center. Proc.Natl.Acad.Sci.USA, 111, 2014
3J77	Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA) 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0, ... 著者 Svidritskiy, E, Brilot, A.F, Koh, C.S, Grigorieff, N, Korostelev, A.A. 登録日 2014-05-29 公開日 2014-08-06 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (6.2 Å) 主引用文献 Structures of Yeast 80S Ribosome-tRNA Complexes in the Rotated and Nonrotated Conformations. Structure, 22, 2014
3J78	Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs) 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0, ... 著者 Svidritskiy, E, Brilot, A.F, Koh, C.S, Grigorieff, N, Korostelev, A.A. 登録日 2014-05-29 公開日 2014-08-06 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (6.3 Å) 主引用文献 Structures of Yeast 80S Ribosome-tRNA Complexes in the Rotated and Nonrotated Conformations. Structure, 22, 2014
3J79	Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit 分子名称: 28S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ... 著者 Wong, W, Bai, X.C, Brown, A, Fernandez, I.S, Hanssen, E, Condron, M, Tan, Y.H, Baum, J, Scheres, S.H.W. 登録日 2014-06-02 公開日 2014-07-16 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine. Elife, 3, 2014
3J7O	Structure of the mammalian 60S ribosomal subunit 分子名称: 28S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ... 著者 Voorhees, R.M, Fernandez, I.S, Scheres, S.H.W, Hegde, R.S. 登録日 2014-08-01 公開日 2014-09-03 最終更新日 2018-07-18 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Structure of the Mammalian ribosome-sec61 complex to 3.4 a resolution. Cell(Cambridge,Mass.), 157, 2014
3J7P	Structure of the 80S mammalian ribosome bound to eEF2 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 5.8S ribosomal RNA, ... 著者 Voorhees, R.M, Fernandez, I.S, Scheres, S.H.W, Hegde, R.S. 登録日 2014-08-01 公開日 2014-09-03 最終更新日 2018-07-18 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Structure of the Mammalian ribosome-sec61 complex to 3.4 a resolution. Cell(Cambridge,Mass.), 157, 2014
3J7Q	Structure of the idle mammalian ribosome-Sec61 complex 分子名称: 28S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ... 著者 Voorhees, R.M, Fernandez, I.S, Scheres, S.H.W, Hegde, R.S. 登録日 2014-08-01 公開日 2014-09-03 最終更新日 2019-10-30 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Structure of the Mammalian ribosome-sec61 complex to 3.4 a resolution. Cell(Cambridge,Mass.), 157, 2014
3J7R	Structure of the translating mammalian ribosome-Sec61 complex 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 5.8S ribosomal RNA, ... 著者 Voorhees, R.M, Fernandez, I.S, Scheres, S.H.W, Hegde, R.S. 登録日 2014-08-01 公開日 2014-09-03 最終更新日 2019-10-30 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Structure of the Mammalian ribosome-sec61 complex to 3.4 a resolution. Cell(Cambridge,Mass.), 157, 2014
3J8H	Structure of the rabbit ryanodine receptor RyR1 in complex with FKBP12 at 3.8 Angstrom resolution 分子名称: Peptidyl-prolyl cis-trans isomerase FKBP1A, Ryanodine receptor 1, ZINC ION 著者 Yan, Z, Bai, X, Yan, C, Wu, J, Scheres, S.H.W, Shi, Y, Yan, N. 登録日 2014-10-26 公開日 2014-12-10 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Structure of the rabbit ryanodine receptor RyR1 at near-atomic resolution. Nature, 517, 2015
3J92	Structure and assembly pathway of the ribosome quality control complex 分子名称: 28S rRNA, 5.8S rRNA, 5S rRNA, ... 著者 Shao, S, Brown, A, Santhanam, B, Hegde, R.S. 登録日 2014-12-02 公開日 2015-01-21 最終更新日 2018-07-18 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Structure and Assembly Pathway of the Ribosome Quality Control Complex. Mol.Cell, 57, 2015
3J9G	Atomic model of the VipA/VipB, the type six secretion system contractile sheath of Vibrio cholerae from cryo-EM 分子名称: VipA, VipB 著者 Kudryashev, M, Wang, R.Y.-R, Brackmann, M, Scherer, S, Maier, T, Baker, D, DiMaio, F, Stahlberg, H, Egelman, E.H, Basler, M. 登録日 2015-01-16 公開日 2015-03-11 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Structure of the Type VI Secretion System Contractile Sheath. Cell(Cambridge,Mass.), 160, 2015
3J9K	Structure of Dark apoptosome in complex with Dronc CARD domain 分子名称: ADENOSINE-5'-DIPHOSPHATE, Apaf-1 related killer DARK, Caspase Nc 著者 Pang, Y, Bai, X, Yan, C, Hao, Q, Chen, Z, Wang, J, Scheres, S.H.W, Shi, Y. 登録日 2015-02-04 公開日 2015-02-25 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (4.1 Å) 主引用文献 Structure of the apoptosome: mechanistic insights into activation of an initiator caspase from Drosophila. Genes Dev., 29, 2015

 

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