Legacy flatfile-incompatible PDB entries

7JK9	Helical filaments of plant light-dependent protochlorophyllide oxidoreductase (LPOR) bound to NADPH, Pchlide, and membrane Descriptor: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Protochlorophyllide, ... Authors: Nguyen, H.C, Gabruk, M, Frost, A. Deposit date: 2020-07-28 Release date: 2021-03-17 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Photocatalytic LPOR forms helical lattices that shape membranes for chlorophyll synthesis. Nat.Plants, 7, 2021
7JMF	Functional Pathways of Biomolecules Retrieved from Single-particle Snapshots - Frame 42 - State 6 (S6) Descriptor: CALCIUM ION, Peptidyl-prolyl cis-trans isomerase FKBP1B, ZINC ION, ... Authors: Dashti, A, des Georges, A, Frank, J, Ourmazd, A. Deposit date: 2020-07-31 Release date: 2020-08-12 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Retrieving functional pathways of biomolecules from single-particle snapshots. Nat Commun, 11, 2020
7JMG	Functional Pathways of Biomolecules Retrieved from Single-particle Snapshots - Frame 22 - State 2 (S2) Descriptor: CALCIUM ION, Peptidyl-prolyl cis-trans isomerase FKBP1B, ZINC ION, ... Authors: Dashti, A, des Georges, A, Frank, J, Ourmazd, A. Deposit date: 2020-07-31 Release date: 2020-08-12 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Retrieving functional pathways of biomolecules from single-particle snapshots. Nat Commun, 11, 2020
7JMH	Functional Pathways of Biomolecules Retrieved from Single-particle Snapshots - Frame 35 - State 4 (S4) Descriptor: CALCIUM ION, Peptidyl-prolyl cis-trans isomerase FKBP1B, ZINC ION, ... Authors: Dashti, A, des Georges, A, Frank, J, Ourmazd, A. Deposit date: 2020-07-31 Release date: 2020-08-12 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Retrieving functional pathways of biomolecules from single-particle snapshots. Nat Commun, 11, 2020
7JMI	Functional Pathways of Biomolecules Retrieved from Single-particle Snapshots - Frame 29 - State 3 (S3) Descriptor: CALCIUM ION, Peptidyl-prolyl cis-trans isomerase FKBP1B, ZINC ION, ... Authors: Dashti, A, des Georges, A, Frank, J, Ourmazd, A. Deposit date: 2020-07-31 Release date: 2020-08-12 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Retrieving functional pathways of biomolecules from single-particle snapshots. Nat Commun, 11, 2020
7JMJ	Functional Pathways of Biomolecules Retrieved from Single-particle Snapshots - Frame 37 - State 5 (S5) Descriptor: CALCIUM ION, Peptidyl-prolyl cis-trans isomerase FKBP1B, ZINC ION, ... Authors: Dashti, A, des Georges, A, Frank, J, Ourmazd, A. Deposit date: 2020-07-31 Release date: 2020-08-12 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Retrieving functional pathways of biomolecules from single-particle snapshots. Nat Commun, 11, 2020
7JOQ	Structure of NV1 small terminase Descriptor: Small Terminase subunit Authors: Cingolani, G, Lokareddy, R. Deposit date: 2020-08-07 Release date: 2020-11-11 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.95 Å) Cite: Biophysical analysis of Pseudomonas-phage PaP3 small terminase suggests a mechanism for sequence-specific DNA-binding by lateral interdigitation. Nucleic Acids Res., 48, 2020
7JQL	Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... Authors: Mardirossian, M, Sola, R, Beckert, B, Valencic, E, Collis, D.W.P, Borisek, J, Armas, F, Di Stasi, A, Buchmann, J, Syroegin, E.A, Polikanov, Y.S, Magistrato, A, Hilpert, K, Wilson, D.N, Scocchi, M. Deposit date: 2020-08-11 Release date: 2020-08-26 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (3 Å) Cite: Peptide Inhibitors of Bacterial Protein Synthesis with Broad Spectrum and SbmA-Independent Bactericidal Activity against Clinical Pathogens. J.Med.Chem., 63, 2020
7JQM	Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-002, mRNA, and deacylated P-site tRNA at 3.05A resolution Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... Authors: Mardirossian, M, Sola, R, Beckert, B, Valencic, E, Collis, D.W.P, Borisek, J, Armas, F, Di Stasi, A, Buchmann, J, Syroegin, E.A, Polikanov, Y.S, Magistrato, A, Hilpert, K, Wilson, D.N, Scocchi, M. Deposit date: 2020-08-11 Release date: 2020-08-26 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (3.05 Å) Cite: Peptide Inhibitors of Bacterial Protein Synthesis with Broad Spectrum and SbmA-Independent Bactericidal Activity against Clinical Pathogens. J.Med.Chem., 63, 2020
7JQU	Abeta 16-36 beta-hairpin mimic with E22G Arctic mutation Descriptor: Abeta 16-36 beta-hairpin mimic VAL-ORN-LYS-LEU-VAL-MEA-PHE-ALA-GLN-ORN-ALA-ILE-ILE-GLY-LEU-MET Authors: Kreutzer, A.G, McKnelly, K.J, Nowick, J.S. Deposit date: 2020-08-11 Release date: 2021-09-08 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.611 Å) Cite: Effects of Familial Alzheimer's Disease Mutations on the Assembly of a beta-Hairpin Peptide Derived from A beta 16-36 . Biochemistry, 61, 2022
7JSS	ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Carbone, C.E, Korostelev, A.A. Deposit date: 2020-08-15 Release date: 2020-11-11 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: ArfB can displace mRNA to rescue stalled ribosomes. Nat Commun, 11, 2020
7JSW	ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Carbone, C.E, Korostelev, A.A. Deposit date: 2020-08-16 Release date: 2020-11-11 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: ArfB can displace mRNA to rescue stalled ribosomes. Nat Commun, 11, 2020
7JSZ	ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Carbone, C.E, Korostelev, A.A. Deposit date: 2020-08-16 Release date: 2020-11-11 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: ArfB can displace mRNA to rescue stalled ribosomes. Nat Commun, 11, 2020
7JT1	70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound (+9-III) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Carbone, C.E, Korostelev, A.A. Deposit date: 2020-08-16 Release date: 2020-11-11 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: ArfB can displace mRNA to rescue stalled ribosomes Nat Commun, 11, 2020
7JT2	70S ribosome stalled on long mRNA with ArfB bound in the A site Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Carbone, C.E, Korostelev, A.A. Deposit date: 2020-08-16 Release date: 2020-11-11 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: ArfB can displace mRNA to rescue stalled ribosomes Nat Commun, 11, 2020
7JT3	Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Carbone, C.E, Korostelev, A.A. Deposit date: 2020-08-17 Release date: 2020-11-11 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: ArfB can displace mRNA to rescue stalled ribosomes Nat Commun, 11, 2020
7JU4	Radial spoke 2 stalk, IDAc, and N-DRC attached with doublet microtubule Descriptor: 28 kDa inner dynein arm light chain, axonemal, ADENOSINE-5'-TRIPHOSPHATE, ... Authors: Gui, M, Ma, M, Sze-Tu, E, Wang, X, Koh, F, Zhong, E, Berger, B, Davis, J, Dutcher, S, Zhang, R, Brown, A. Deposit date: 2020-08-19 Release date: 2020-12-16 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structures of radial spokes and associated complexes important for ciliary motility. Nat.Struct.Mol.Biol., 28, 2021
7K00	Structure of the Bacterial Ribosome at 2 Angstrom Resolution Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Watson, Z.L, Ward, F.R, Meheust, R, Ad, O, Schepartz, A, Banfield, J.F, Cate, J.H.D. Deposit date: 2020-09-02 Release date: 2020-09-23 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (1.98 Å) Cite: Structure of the bacterial ribosome at 2 angstrom resolution. Elife, 9, 2020
7K0S	Cryo-EM structure of rabbit RyR1 in the presence of Mg2+ and AMP-PCP in nanodisc Descriptor: MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, RyR1, ... Authors: Nayak, A.R, Samso, M. Deposit date: 2020-09-05 Release date: 2021-09-22 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Interplay between Mg2+ and Ca2+ at multiple sites of the ryanodine receptor Nat Commun, 15, 2024
7K0T	Cryo-EM structure of rabbit RyR1 in the presence of AMP-PCP in nanodisc Descriptor: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, RyR1, ZINC ION Authors: Nayak, A.R, Samso, M. Deposit date: 2020-09-05 Release date: 2021-09-22 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (4.3 Å) Cite: Ca 2+ -inactivation of the mammalian ryanodine receptor type 1 in a lipidic environment revealed by cryo-EM. Elife, 11, 2022
7K22	Murine polyomavirus pentavalent capsomer with 8A7H5 Fab, subparticle reconstruction Descriptor: 8A7H5 Fab heavy chain, 8A7H5 Fab light chain, Capsid protein VP1 Authors: Goetschius, D.J, Hafenstein, S.L. Deposit date: 2020-09-08 Release date: 2020-10-07 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Antibody escape by polyomavirus capsid mutation facilitates neurovirulence. Elife, 9, 2020
7K23	Murine polyomavirus hexavalent capsomer with 8A7H5 Fab, subparticle reconstruction Descriptor: 8A7H5 Fab heavy chain, 8A7H5 Fab light chain, Capsid protein VP1 Authors: Goetschius, D.J, Hafenstein, S.L. Deposit date: 2020-09-08 Release date: 2020-10-07 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Antibody escape by polyomavirus capsid mutation facilitates neurovirulence. Elife, 9, 2020
7K24	Murine polyomavirus pentavalent capsomer, subparticle reconstruction Descriptor: Capsid protein VP1 Authors: Goetschius, D.J, Hafenstein, S.L. Deposit date: 2020-09-08 Release date: 2020-10-07 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Antibody escape by polyomavirus capsid mutation facilitates neurovirulence. Elife, 9, 2020
7K50	Pre-translocation non-frameshifting(CCA-A) complex (Structure I) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Demo, G, Loveland, A.B, Svidritskiy, E, Gamper, H.B, Hou, Y.M, Korostelev, A.A. Deposit date: 2020-09-16 Release date: 2021-07-28 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structural basis for +1 ribosomal frameshifting during EF-G-catalyzed translocation. Nat Commun, 12, 2021
7K51	Mid-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure II) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Demo, G, Loveland, A.B, Svidritskiy, E, Gamper, H.B, Hou, Y.M, Korostelev, A.A. Deposit date: 2020-09-16 Release date: 2021-07-28 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Structural basis for +1 ribosomal frameshifting during EF-G-catalyzed translocation. Nat Commun, 12, 2021

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