Legacy flatfile-incompatible PDB entries

7O2T	PqsR (MvfR) in complex with antagonist 61 Descriptor: 2-[4-[(2S)-3-(6-chloro-4-oxoquinazolin-3-yl)-2-hydroxypropoxy]phenyl]acetonitrile, LysR family transcriptional regulator Authors: Emsley, J, Richardson, W. Deposit date: 2021-03-31 Release date: 2022-04-13 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.65 Å) Cite: PqsR (MvfR) in complex with antagonist 61 To Be Published
7O2U	PqsR (MvfR) in complex with antagonist 40 Descriptor: 2-[4-[(2S)-3-(6-chloranyl-4-oxidanylidene-quinazolin-3-yl)-2-oxidanyl-propoxy]phenoxy]ethanenitrile, LysR family transcriptional regulator Authors: Emsley, J, Richardson, W. Deposit date: 2021-03-31 Release date: 2022-04-13 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (3 Å) Cite: PqsR (MvfR) in complex with antagonist 40 To Be Published
7O2Y	Sandercyanin Fluorescent Protein variant V71E bound to biliverdin IX-alpha Descriptor: BILIVERDINE IX ALPHA, Sandercyanin Fluorescent Protein Authors: Ghosh, S, Yadav, K, Ramaswamy, S. Deposit date: 2021-03-31 Release date: 2022-04-13 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Modulation of biliverdin dynamics and spectral properties by Sandercyanin. Rsc Adv, 12, 2022
7O42	TrwK/VirB4unbound trimer of dimers complex (with Hcp1) from the R388 type IV secretion system determined by cryo-EM. Descriptor: TrwK protein,Protein hcp1 Authors: Vadakkepat, A.K, Mace, K, Lukoyanova, N, Waksman, G. Deposit date: 2021-04-04 Release date: 2022-06-22 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Cryo-EM structure of a type IV secretion system. Nature, 607, 2022
7O4A	Crystal structure of Penicillin-Binding Protein 1 (PBP1) from Staphylococcus aureus in complex with piperacillin Descriptor: Hydrolyzed piperacillin, Penicillin-binding protein 1 Authors: Martinez Caballero, S, Hermoso, J.A. Deposit date: 2021-04-05 Release date: 2021-11-03 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (3.028 Å) Cite: Integrative structural biology of the penicillin-binding protein-1 from Staphylococcus aureus , an essential component of the divisome machinery. Comput Struct Biotechnol J, 19, 2021
7O5B	Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound Descriptor: 16S rRNA (1533-MER), 23S rRNA (2887-MER), 30S ribosomal protein S10, ... Authors: Kratzat, H, Czech, L, Berninghausen, O, Bange, G, Beckmann, R. Deposit date: 2021-04-08 Release date: 2022-02-02 Last modified: 2022-03-09 Method: ELECTRON MICROSCOPY (3.33 Å) Cite: Inhibition of SRP-dependent protein secretion by the bacterial alarmone (p)ppGpp. Nat Commun, 13, 2022
7O5N	Crystal Structure of a Class D carbapenemase complexed with Avibactam Descriptor: (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide, 1-BUTANOL, Beta-lactamase, ... Authors: Zhou, Q, Zhang, Z, He, Y, Jin, Y. Deposit date: 2021-04-09 Release date: 2022-04-20 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.6 Å) Cite: An Ion-Pair Induced Intermediate Complex Captured in Class D Carbapenemase Reveals Chloride Ion as a Janus Effector Modulating Activity Acs Cent.Sci., 2023
7O5Q	Crystal Structure of a Class D Carbapenemase Complexed with Hydrolyzed Oxacillin Descriptor: (2R,4S)-2-[(1R)-2-butoxy-1-[(5-methyl-3-phenyl-1,2-oxazol-4-yl)carbonylamino]-2-oxidanylidene-ethyl]-5,5-dimethyl-1,3-thiazolidin-3-ium-4-carboxylic acid, (2R,4S)-2-[(R)-carboxy{[(5-methyl-3-phenyl-1,2-oxazol-4-yl)carbonyl]amino}methyl]-5,5-dimethyl-1,3-thiazolidine-4-carbo xylic acid, 1-BUTANOL, ... Authors: Zhou, Q, He, Y, Jin, Y. Deposit date: 2021-04-09 Release date: 2022-04-20 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Crystal Structure of a Class D Carbapenemase Complexed with Hydrolyzed Oxacillin To Be Published
7O5T	Crystal Structure of a Class D Carbapenemase Complexed with Bromide Descriptor: BROMIDE ION, Beta-lactamase Authors: Zhou, Q, He, Y, Jin, Y. Deposit date: 2021-04-09 Release date: 2022-04-20 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.81 Å) Cite: An Ion-Pair Induced Intermediate Complex Captured in Class D Carbapenemase Reveals Chloride Ion as a Janus Effector Modulating Activity Acs Cent.Sci., 2023
7O5V	Crystal structure of holo-H44A mutant of Hydroxy ketone aldolase (SwHKA) from Sphingomonas wittichii RW1, in complex with Hydroxypyruvate Descriptor: 3-HYDROXYPYRUVIC ACID, BROMIDE ION, HpcH/HpaI aldolase, ... Authors: Laustsen, J, Justo, I, Marsden, S.R, Hanefeld, U, Bento, I. Deposit date: 2021-04-09 Release date: 2022-11-16 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Substrate Induced Movement of the Metal Cofactor between Active and Resting State. Angew.Chem.Int.Ed.Engl., 61, 2022
7O5W	Crystal structure of holo-F210W mutant of Hydroxy ketone aldolase (SwHKA)from Sphingomonas wittichii RW1 Descriptor: BROMIDE ION, DI(HYDROXYETHYL)ETHER, HpcH/HpaI aldolase, ... Authors: Laustsen, J, Justo, I, Marsden, S.R, Hanefeld, U, Bento, I. Deposit date: 2021-04-09 Release date: 2022-10-26 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.2 Å) Cite: Substrate Induced Movement of the Metal Cofactor between Active and Resting State. Angew.Chem.Int.Ed.Engl., 61, 2022
7O6X	Tankyrase 2 in complex with an inhibitor (OM-153) Descriptor: N-[3-[5-(5-ethoxypyridin-2-yl)-4-(2-fluorophenyl)-1,2,4-triazol-3-yl]cyclobutyl]quinoxaline-5-carboxamide, Poly [ADP-ribose] polymerase tankyrase-2, ZINC ION Authors: Sowa, S.T, Lehtio, L. Deposit date: 2021-04-12 Release date: 2022-01-12 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Development of a 1,2,4-Triazole-Based Lead Tankyrase Inhibitor: Part II. J.Med.Chem., 64, 2021
7O76	Reversible supramolecular assembly of the anti-microbial peptide plectasin Descriptor: DI(HYDROXYETHYL)ETHER, Fungal defensin plectasin Authors: Pohl, C, Noergaard, N, Harris, P. Deposit date: 2021-04-13 Release date: 2022-06-29 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.131 Å) Cite: pH- and concentration-dependent supramolecular assembly of a fungal defensin plectasin variant into helical non-amyloid fibrils. Nat Commun, 13, 2022
7O7Y	Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution) Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S11, ... Authors: Bhatt, P.R, Scaiola, A, Leibundgut, M.A, Atkins, J.F, Ban, N. Deposit date: 2021-04-14 Release date: 2021-06-02 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2.2 Å) Cite: Structural basis of ribosomal frameshifting during translation of the SARS-CoV-2 RNA genome. Science, 372, 2021
7O7Z	Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot) Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S11, ... Authors: Bhatt, P.R, Scaiola, A, Leibundgut, M.A, Atkins, J.F, Ban, N. Deposit date: 2021-04-14 Release date: 2021-06-02 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2.4 Å) Cite: Structural basis of ribosomal frameshifting during translation of the SARS-CoV-2 RNA genome. Science, 372, 2021
7O80	Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S11, ... Authors: Bhatt, P.R, Scaiola, A, Leibundgut, M.A, Atkins, J.F, Ban, N. Deposit date: 2021-04-14 Release date: 2021-06-02 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Structural basis of ribosomal frameshifting during translation of the SARS-CoV-2 RNA genome. Science, 372, 2021
7O81	Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S11, ... Authors: Bhatt, P.R, Scaiola, A, Leibundgut, M.A, Atkins, J.F, Ban, N. Deposit date: 2021-04-14 Release date: 2021-06-02 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structural basis of ribosomal frameshifting during translation of the SARS-CoV-2 RNA genome. Science, 372, 2021
7O87	Crystal structure of holo-F210W mutant of Hydroxy ketone aldolase (SwHKA) from Sphingomonas wittichii RW1 in complex with hydroxypyruvate Descriptor: 3-HYDROXYPYRUVIC ACID, BROMIDE ION, DI(HYDROXYETHYL)ETHER, ... Authors: Laustsen, J, Justo, I, Marsden, S.R, Hanefeld, U, Bento, I. Deposit date: 2021-04-14 Release date: 2022-10-26 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Substrate Induced Movement of the Metal Cofactor between Active and Resting State. Angew.Chem.Int.Ed.Engl., 61, 2022
7O9K	Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-Tu Descriptor: 16S rRNA, 39S ribosomal protein L10, mitochondrial, ... Authors: Valentin Gese, G, Hallberg, B.M. Deposit date: 2021-04-16 Release date: 2021-06-30 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structural basis for late maturation steps of the human mitoribosomal large subunit. Nat Commun, 12, 2021
7O9M	Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1 and the MALSU module Descriptor: 16S rRNA, 39S ribosomal protein L10, mitochondrial, ... Authors: Valentin Gese, G, Hallberg, B.M. Deposit date: 2021-04-16 Release date: 2021-06-30 Method: ELECTRON MICROSCOPY (2.5 Å) Cite: Structural basis for late maturation steps of the human mitoribosomal large subunit. Nat Commun, 12, 2021
7O9N	Crystal Structure of a Class D Carbapenemase Complexed with Bicarbonate Descriptor: BICARBONATE ION, Beta-lactamase Authors: Zhou, Q, He, Y, Jin, Y. Deposit date: 2021-04-16 Release date: 2022-05-04 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.97 Å) Cite: An Ion-Pair Induced Intermediate Complex Captured in Class D Carbapenemase Reveals Chloride Ion as a Janus Effector Modulating Activity Acs Cent.Sci., 2023
7O9R	Crystal structure of holo-H44A mutant of Hydroxy ketone aldolase (SwHKA) from Sphingomonas wittichii RW1 Descriptor: BROMIDE ION, DI(HYDROXYETHYL)ETHER, HpcH/HpaI aldolase, ... Authors: Laustsen, J, Justo, I, Marsden, S.R, Hanefeld, U, Bento, I. Deposit date: 2021-04-16 Release date: 2022-10-26 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Substrate Induced Movement of the Metal Cofactor between Active and Resting State. Angew.Chem.Int.Ed.Engl., 61, 2022
7OA0	Crystal structure of di-phosphorylated human CLK1 in complex with 5-(6,7-dichloro-1H-indol-3-yl)pyrimidin-4-amine Descriptor: 5-[6,7-bis(chloranyl)-1-methyl-indol-3-yl]pyrimidin-4-amine, Dual specificity protein kinase CLK1 Authors: Livnah, O, Domovich, Y, Bracher, F, Aiger, C. Deposit date: 2021-04-18 Release date: 2022-05-04 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.81 Å) Cite: Development of novel CLK1 inhibitors as potential drugs for treatment of Chikungunya virus infections To Be Published
7OA1	Crystal structure of alfa carbonic anhydrase from Schistosoma mansoni with 4-(2-(3-(4-iodophenyl)ureido)ethyl)benzenesulfonamide Descriptor: 1-(4-iodophenyl)-3-[2-(4-sulfamoylphenyl)ethyl]urea, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Angelil, A, Ferraroni, M. Deposit date: 2021-04-18 Release date: 2022-05-04 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural Insights into Schistosoma mansoni Carbonic Anhydrase (SmCA) Inhibition by Selenoureido-Substituted Benzenesulfonamides. J.Med.Chem., 64, 2021
7OA4	Crystal structure of the N-terminal endonuclease domain of La Crosse virus L-protein bound to compound L-742,001 Descriptor: (2Z)-4-[1-benzyl-4-(4-chlorobenzyl)piperidin-4-yl]-2-hydroxy-4-oxobut-2-enoic acid, FORMIC ACID, MANGANESE (II) ION, ... Authors: Feracci, M, Hernandez, S, Vincentelli, R, Ferron, F, Reguera, J, Canard, B, Alvarez, K. Deposit date: 2021-04-19 Release date: 2022-08-03 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Crystal structure of the N-terminal endonuclease domain of La Crosse virus L-protein bound to compound L-742,001 To Be Published

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