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Yorodumi- PDB-2rb4: Crystal structure of the Helicase domain of human DDX25 RNA helicase -
+Open data
-Basic information
Entry | Database: PDB / ID: 2rb4 | |||||||||
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Title | Crystal structure of the Helicase domain of human DDX25 RNA helicase | |||||||||
Components | ATP-dependent RNA helicase DDX25 | |||||||||
Keywords | HYDROLASE / RNA helicase / Rossmann fold / Structural Genomics / Structural Genomics Consortium / SGC / Alternative initiation / ATP-binding / Developmental protein / Differentiation / mRNA transport / Nucleotide-binding / Nucleus / Phosphorylation / RNA-binding / Spermatogenesis / Translation regulation / Transport | |||||||||
Function / homology | Function and homology information chromatoid body / multicellular organism development / poly(A)+ mRNA export from nucleus / spermatid development / mRNA export from nucleus / cytoplasmic stress granule / regulation of translation / RNA helicase activity / RNA helicase / RNA binding ...chromatoid body / multicellular organism development / poly(A)+ mRNA export from nucleus / spermatid development / mRNA export from nucleus / cytoplasmic stress granule / regulation of translation / RNA helicase activity / RNA helicase / RNA binding / ATP binding / nucleus / cytoplasm Similarity search - Function | |||||||||
Biological species | Homo sapiens (human) | |||||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.8 Å | |||||||||
Authors | Lehtio, L. / Hogbom, M. / Uppenberg, J. / Arrowsmith, C.H. / Berglund, H. / Edwards, A.M. / Ehn, M. / Flodin, S. / Flores, A. / Graslund, S. ...Lehtio, L. / Hogbom, M. / Uppenberg, J. / Arrowsmith, C.H. / Berglund, H. / Edwards, A.M. / Ehn, M. / Flodin, S. / Flores, A. / Graslund, S. / Hallberg, B.M. / Hammarstrom, M. / Kotenyova, T. / Nilsson-Ehle, P. / Nordlund, P. / Nyman, T. / Ogg, D. / Persson, C. / Sagemark, J. / Stenmark, P. / Sundstrom, M. / Thorsell, A.G. / Van den Berg, S. / Weigelt, J. / Holmberg-Schiavone, L. / Structural Genomics Consortium (SGC) | |||||||||
Citation | Journal: Plos One / Year: 2010 Title: Comparative Structural Analysis of Human DEAD-Box RNA Helicases. Authors: Schutz, P. / Karlberg, T. / van den Berg, S. / Collins, R. / Lehtio, L. / Hogbom, M. / Holmberg-Schiavone, L. / Tempel, W. / Park, H.W. / Hammarstrom, M. / Moche, M. / Thorsell, A.G. / Schuler, H. | |||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2rb4.cif.gz | 79 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2rb4.ent.gz | 57.8 KB | Display | PDB format |
PDBx/mmJSON format | 2rb4.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 2rb4_validation.pdf.gz | 448.4 KB | Display | wwPDB validaton report |
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Full document | 2rb4_full_validation.pdf.gz | 453.1 KB | Display | |
Data in XML | 2rb4_validation.xml.gz | 13.9 KB | Display | |
Data in CIF | 2rb4_validation.cif.gz | 17.6 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/rb/2rb4 ftp://data.pdbj.org/pub/pdb/validation_reports/rb/2rb4 | HTTPS FTP |
-Related structure data
Related structure data | 2g9nC 2p6nC 2pl3C 3b7gC 3berC 3borC 3dkpC 3fe2C 3iuyC 3ly5C 1fukS S: Starting model for refinement C: citing same article (ref.) |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Ens-ID: 1 / Refine code: 1
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