[English] 日本語
Yorodumi- PDB-1cax: DETERMINATION OF THREE CRYSTAL STRUCTURES OF CANAVALIN BY MOLECUL... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1cax | ||||||
---|---|---|---|---|---|---|---|
Title | DETERMINATION OF THREE CRYSTAL STRUCTURES OF CANAVALIN BY MOLECULAR REPLACEMENT | ||||||
Components | (CANAVALIN) x 2 | ||||||
Keywords | SEED STORAGE PROTEIN | ||||||
Function / homology | Function and homology information nutrient reservoir activity / protein-containing complex / identical protein binding Similarity search - Function | ||||||
Biological species | Canavalia ensiformis (jack bean) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 2.6 Å | ||||||
Authors | Ko, T-P. / Ng, J.D. / Day, J. / Greenwood, A. / McPherson, A. | ||||||
Citation | Journal: Acta Crystallogr.,Sect.D / Year: 1993 Title: Determination of three crystal structures of canavalin by molecular replacement. Authors: Ko, T.P. / Ng, J.D. / Greenwood, A. / McPherson, A. #1: Journal: Plant Physiol. / Year: 1993 Title: The Three-Dimensional Structure of Canavalin from Jack Bean (Canavalia Ensiformis) Authors: Ko, T-P. / Ng, J.D. / Day, J. / McPherson, A. | ||||||
History |
|
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
---|
-Downloads & links
-Download
PDBx/mmCIF format | 1cax.cif.gz | 222.5 KB | Display | PDBx/mmCIF format |
---|---|---|---|---|
PDB format | pdb1cax.ent.gz | 179.6 KB | Display | PDB format |
PDBx/mmJSON format | 1cax.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1cax_validation.pdf.gz | 472.6 KB | Display | wwPDB validaton report |
---|---|---|---|---|
Full document | 1cax_full_validation.pdf.gz | 646.9 KB | Display | |
Data in XML | 1cax_validation.xml.gz | 60.8 KB | Display | |
Data in CIF | 1cax_validation.cif.gz | 81.4 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ca/1cax ftp://data.pdbj.org/pub/pdb/validation_reports/ca/1cax | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 |
| ||||||||
Unit cell |
|
-Components
#1: Protein | Mass: 20968.727 Da / Num. of mol.: 3 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Canavalia ensiformis (jack bean) / References: UniProt: P50477 #2: Protein | Mass: 20641.021 Da / Num. of mol.: 3 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Canavalia ensiformis (jack bean) / References: UniProt: P50477 |
---|
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
---|
-Sample preparation
Crystal | Density Matthews: 2.74 Å3/Da / Density % sol: 55.1 % |
---|---|
Crystal grow | *PLUS pH: 6.8 / Method: unknown |
Components of the solutions | *PLUS Conc.: 1.0 %(w/v) / Chemical formula: NaCl |
-Data collection
Radiation | Scattering type: x-ray |
---|---|
Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 2.6 Å / Num. obs: 37938 / Num. measured all: 140046 / Rmerge(I) obs: 0.0548 |
Reflection shell | *PLUS Highest resolution: 2.6 Å / Lowest resolution: 2.8 Å / Num. unique obs: 7058 / Num. measured obs: 18236 / Rmerge(I) obs: 0.1744 |
-Processing
Software | Name: TNT / Classification: refinement | ||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Resolution: 2.6→8 Å / σ(I): 3 /
| ||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.6→8 Å
| ||||||||||||||||||||||||||||||
Refine LS restraints |
| ||||||||||||||||||||||||||||||
Refinement | *PLUS Highest resolution: 2.6 Å / Rfactor obs: 0.175 / Rfactor Rwork: 0.185 | ||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
|