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- PDB-1ipk: CRYSTAL STRUCTURES OF RECOMBINANT AND NATIVE SOYBEAN BETA-CONGLYC... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1ipk | ||||||
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Title | CRYSTAL STRUCTURES OF RECOMBINANT AND NATIVE SOYBEAN BETA-CONGLYCININ BETA HOMOTRIMERS | ||||||
![]() | BETA-CONGLYCININ, BETA CHAIN | ||||||
![]() | SUGAR BINDING PROTEIN / soybean / storage protein / vicilin | ||||||
Function / homology | ![]() aleurone grain / protein storage vacuole / nutrient reservoir activity / endoplasmic reticulum Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Maruyama, N. / Adachi, M. / Takahashi, K. / Yagasaki, K. / Kohno, M. / Takenaka, Y. / Okuda, E. / Nakagawa, S. / Mikami, B. / Utsumi, S. | ||||||
![]() | ![]() Title: Crystal structures of recombinant and native soybean beta-conglycinin beta homotrimers. Authors: Maruyama, N. / Adachi, M. / Takahashi, K. / Yagasaki, K. / Kohno, M. / Takenaka, Y. / Okuda, E. / Nakagawa, S. / Mikami, B. / Utsumi, S. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 226.6 KB | Display | ![]() |
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PDB format | ![]() | 185.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 452.6 KB | Display | ![]() |
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Full document | ![]() | 538.2 KB | Display | |
Data in XML | ![]() | 47.4 KB | Display | |
Data in CIF | ![]() | 64.1 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 48033.496 Da / Num. of mol.: 3 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.33 Å3/Da / Density % sol: 47.23 % | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Crystal grow | Temperature: 277 K / Method: vapor diffusion, hanging drop / pH: 5.5 Details: PEG10000, MES, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Crystal grow | *PLUS Temperature: 4 ℃ / pH: 4.8 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 293 K |
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Diffraction source | Source: ![]() |
Detector | Type: SIEMENS HI-STAR / Detector: AREA DETECTOR / Date: Oct 28, 1996 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Highest resolution: 2.7 Å / Num. all: 101661 / Num. obs: 33007 / % possible obs: 91.02 % / Redundancy: 3.08 % / Rsym value: 0.055 |
Reflection | *PLUS Highest resolution: 2.8 Å / Num. measured all: 101661 / Rmerge(I) obs: 0.055 |
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Processing
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Refinement | Method to determine structure: ![]()
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Refinement step | Cycle: LAST / Resolution: 2.7→7 Å
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Refinement | *PLUS Highest resolution: 2.8 Å / Rfactor obs: 0.205 | ||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||
Refine LS restraints | *PLUS
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