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Yorodumi- PDB-1cav: THE THREE-DIMENSIONAL STRUCTURE OF CANAVALIN FROM JACK BEAN (CANA... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1cav | ||||||
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Title | THE THREE-DIMENSIONAL STRUCTURE OF CANAVALIN FROM JACK BEAN (CANAVALIA ENSIFORMIS) | ||||||
Components | (CANAVALIN) x 2 | ||||||
Keywords | SEED STORAGE PROTEIN | ||||||
Function / homology | Function and homology information nutrient reservoir activity / protein-containing complex / identical protein binding Similarity search - Function | ||||||
Biological species | Canavalia ensiformis (jack bean) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 2.6 Å | ||||||
Authors | Ko, T-P. / Ng, J.D. / McPherson, A. | ||||||
Citation | Journal: Acta Crystallogr.,Sect.D / Year: 1993 Title: Determination of three crystal structures of canavalin by molecular replacement. Authors: Ko, T.P. / Ng, J.D. / Day, J. / Greenwood, A. / McPherson, A. #1: Journal: Plant Physiol. / Year: 1993 Title: The three-dimensional structure of canavalin from jack bean (Canavalia ensiformis). Authors: Ko, T.-P. / Ng, J.D. / Day, J. / Greenwood, A. / McPherson, A. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1cav.cif.gz | 84.3 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1cav.ent.gz | 64.4 KB | Display | PDB format |
PDBx/mmJSON format | 1cav.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ca/1cav ftp://data.pdbj.org/pub/pdb/validation_reports/ca/1cav | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 20968.727 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Canavalia ensiformis (jack bean) / References: UniProt: P50477 |
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#2: Protein | Mass: 20641.021 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Canavalia ensiformis (jack bean) / References: UniProt: P50477 |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.86 Å3/Da / Density % sol: 56.97 % | ||||||||||||||||||||||||
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Crystal grow | *PLUS Temperature: 4, 8 ℃ / pH: 6.8 / Method: vapor diffusion | ||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
-Processing
Software | Name: TNT / Classification: refinement | ||||||||||||||||||||||||||||||
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Refinement | Resolution: 2.6→8 Å / σ(I): 3 /
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Refinement step | Cycle: LAST / Resolution: 2.6→8 Å
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Refine LS restraints |
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Refine LS restraints | *PLUS
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