+データを開く
-基本情報
登録情報 | データベース: PDB / ID: 2w44 | ||||||
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タイトル | Structure DeltaA1-A4 insulin | ||||||
要素 | (INSULINインスリン) x 2 | ||||||
キーワード | HORMONE (ホルモン) / INSULIN (インスリン) | ||||||
機能・相同性 | 機能・相同性情報 negative regulation of NAD(P)H oxidase activity / negative regulation of glycogen catabolic process / regulation of cellular amino acid metabolic process / Signaling by Insulin receptor / IRS activation / nitric oxide-cGMP-mediated signaling / Insulin processing / negative regulation of fatty acid metabolic process / negative regulation of feeding behavior / regulation of protein secretion ...negative regulation of NAD(P)H oxidase activity / negative regulation of glycogen catabolic process / regulation of cellular amino acid metabolic process / Signaling by Insulin receptor / IRS activation / nitric oxide-cGMP-mediated signaling / Insulin processing / negative regulation of fatty acid metabolic process / negative regulation of feeding behavior / regulation of protein secretion / positive regulation of peptide hormone secretion / Regulation of gene expression in beta cells / positive regulation of respiratory burst / alpha-beta T cell activation / negative regulation of acute inflammatory response / negative regulation of respiratory burst involved in inflammatory response / positive regulation of dendritic spine maintenance / Synthesis, secretion, and deacylation of Ghrelin / positive regulation of glycogen biosynthetic process / negative regulation of protein secretion / Signal attenuation / FOXO-mediated transcription of oxidative stress, metabolic and neuronal genes / negative regulation of gluconeogenesis / positive regulation of nitric oxide mediated signal transduction / fatty acid homeostasis / regulation of protein localization to plasma membrane / COPI-mediated anterograde transport / negative regulation of lipid catabolic process / positive regulation of lipid biosynthetic process / negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway / positive regulation of insulin receptor signaling pathway / negative regulation of reactive oxygen species biosynthetic process / 小胞 / positive regulation of protein autophosphorylation / Insulin receptor recycling / insulin-like growth factor receptor binding / NPAS4 regulates expression of target genes / positive regulation of protein metabolic process / neuron projection maintenance / endoplasmic reticulum-Golgi intermediate compartment membrane / positive regulation of brown fat cell differentiation / activation of protein kinase B activity / positive regulation of glycolytic process / Insulin receptor signalling cascade / positive regulation of mitotic nuclear division / Regulation of insulin secretion / positive regulation of long-term synaptic potentiation / endosome lumen / positive regulation of cytokine production / acute-phase response / positive regulation of protein secretion / positive regulation of nitric-oxide synthase activity / regulation of transmembrane transporter activity / positive regulation of cell differentiation / positive regulation of glucose import / negative regulation of proteolysis / regulation of synaptic plasticity / wound healing / insulin receptor binding / hormone activity / negative regulation of protein catabolic process / 認識 / positive regulation of neuron projection development / Golgi lumen / positive regulation of protein localization to nucleus / vasodilation / glucose metabolic process / regulation of protein localization / glucose homeostasis / cell-cell signaling / insulin receptor signaling pathway / positive regulation of NF-kappaB transcription factor activity / PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling / positive regulation of cell growth / secretory granule lumen / protease binding / positive regulation of MAPK cascade / positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction / positive regulation of cell migration / G protein-coupled receptor signaling pathway / Amyloid fiber formation / 小胞体 / ゴルジ体 / negative regulation of gene expression / positive regulation of cell population proliferation / positive regulation of gene expression / regulation of DNA-templated transcription / extracellular space / extracellular region / identical protein binding 類似検索 - 分子機能 | ||||||
生物種 | HOMO SAPIENS (ヒト) | ||||||
手法 | X線回折 / シンクロトロン / 分子置換 / 解像度: 2 Å | ||||||
データ登録者 | Thorsoee, K.S. / Schlein, M. / Brandt, J. / Schluckebier, G. / Naver, H. | ||||||
引用 | ジャーナル: Biochemistry / 年: 2010 タイトル: Kinetic Evidence for the Sequential Association of Insulin Binding Sites 1 and 2 to the Insulin Receptor and the Influence of Receptor Isoform. 著者: Thorsoe, K.S. / Schlein, M. / Steensgaard, D.B. / Brandt, J. / Schluckebier, G. / Naver, H. | ||||||
履歴 |
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-構造の表示
構造ビューア | 分子: MolmilJmol/JSmol |
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-ダウンロードとリンク
-ダウンロード
PDBx/mmCIF形式 | 2w44.cif.gz | 41.4 KB | 表示 | PDBx/mmCIF形式 |
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PDB形式 | pdb2w44.ent.gz | 30.1 KB | 表示 | PDB形式 |
PDBx/mmJSON形式 | 2w44.json.gz | ツリー表示 | PDBx/mmJSON形式 | |
その他 | その他のダウンロード |
-検証レポート
アーカイブディレクトリ | https://data.pdbj.org/pub/pdb/validation_reports/w4/2w44 ftp://data.pdbj.org/pub/pdb/validation_reports/w4/2w44 | HTTPS FTP |
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-関連構造データ
関連構造データ | 7insS S: 精密化の開始モデル |
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類似構造データ |
-リンク
-集合体
登録構造単位 |
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単位格子 |
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-要素
-タンパク質・ペプチド , 2種, 6分子 ACEBDF
#1: タンパク質・ペプチド | 分子量: 1985.244 Da / 分子数: 3 / 断片: RESIDUES 82-98 / 由来タイプ: 組換発現 / 詳細: HUMAN INSULIN WITH A-CHAIN RESIDUES 1-4 DELETION / 由来: (組換発現) HOMO SAPIENS (ヒト) / 発現宿主: SACCHAROMYCES CEREVISIAE (パン酵母) / 参照: UniProt: A6XGL2, UniProt: P01308*PLUS #2: タンパク質・ペプチド | 分子量: 3332.849 Da / 分子数: 3 / 断片: RESIDUES 25-53 / 由来タイプ: 組換発現 / 由来: (組換発現) HOMO SAPIENS (ヒト) / 発現宿主: SACCHAROMYCES CEREVISIAE (パン酵母) / 参照: UniProt: A6XGL2, UniProt: P01308*PLUS |
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-非ポリマー , 4種, 49分子
#3: 化合物 | #4: 化合物 | ChemComp-ZN / | #5: 化合物 | ChemComp-CL / | #6: 水 | ChemComp-HOH / | |
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-実験情報
-実験
実験 | 手法: X線回折 / 使用した結晶の数: 1 |
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-試料調製
結晶 | マシュー密度: 2.1 Å3/Da / 溶媒含有率: 42 % / 解説: NONE |
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結晶化 | pH: 7 詳細: 150 MM NA/K-PHOSPHATE PH 7.0 AND 7.5 % (V/V) ETHANOL |
-データ収集
回折 | 平均測定温度: 100 K |
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放射光源 | 由来: シンクロトロン / サイト: MAX II / ビームライン: I911-3 / 波長: 1 |
検出器 | タイプ: MARRESEARCH / 検出器: CCD / 日付: 2008年2月5日 |
放射 | プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray |
放射波長 | 波長: 1 Å / 相対比: 1 |
反射 | 解像度: 2→28 Å / Num. obs: 8261 / % possible obs: 87.6 % / Observed criterion σ(I): 0 / 冗長度: 5.7 % / Rmerge(I) obs: 0.04 / Net I/σ(I): 24.1 |
反射 シェル | 解像度: 2→2.05 Å / 冗長度: 5.1 % / Rmerge(I) obs: 0.2 / Mean I/σ(I) obs: 7 / % possible all: 53.5 |
-解析
ソフトウェア |
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精密化 | 構造決定の手法: 分子置換 開始モデル: PDB ENTRY 7INS 解像度: 2→28.34 Å / Cor.coef. Fo:Fc: 0.941 / Cor.coef. Fo:Fc free: 0.92 / SU B: 5.965 / SU ML: 0.094 / TLS residual ADP flag: LIKELY RESIDUAL / 交差検証法: THROUGHOUT / ESU R: 0.271 / ESU R Free: 0.214 / 立体化学のターゲット値: MAXIMUM LIKELIHOOD / 詳細: HYDROGENS HAVE BEEN ADDED IN THE
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溶媒の処理 | イオンプローブ半径: 0.8 Å / 減衰半径: 0.8 Å / VDWプローブ半径: 1.2 Å / 溶媒モデル: BABINET MODEL WITH MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
原子変位パラメータ | Biso mean: 23.76 Å2
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精密化ステップ | サイクル: LAST / 解像度: 2→28.34 Å
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拘束条件 |
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