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- SASDDZ2: Leucine-rich repeat and fibronectin type-III domain-containing pr... -

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Basic information

Entry
Database: SASBDB / ID: SASDDZ2
SampleLeucine-rich repeat and fibronectin type-III domain-containing protein 4: Fragment SALM3 LRR-Ig-Fn
  • Leucine-rich repeat and fibronectin type-III domain-containing protein 4 (protein), LRR-Ig-Fn, Mus musculus
Function / homology
Function and homology information


Synaptic adhesion-like molecules / regulation of postsynaptic density assembly / synaptic membrane adhesion / regulation of presynapse assembly / GABA-ergic synapse / postsynaptic density membrane / glutamatergic synapse / cell surface
Similarity search - Function
: / Cysteine-rich flanking region, C-terminal / Leucine rich repeat C-terminal domain / Leucine Rich Repeat / Leucine rich repeat / Leucine-rich repeat, typical subtype / Leucine-rich repeats, typical (most populated) subfamily / Immunoglobulin I-set / Immunoglobulin I-set domain / Fibronectin type III domain ...: / Cysteine-rich flanking region, C-terminal / Leucine rich repeat C-terminal domain / Leucine Rich Repeat / Leucine rich repeat / Leucine-rich repeat, typical subtype / Leucine-rich repeats, typical (most populated) subfamily / Immunoglobulin I-set / Immunoglobulin I-set domain / Fibronectin type III domain / Leucine-rich repeat / Immunoglobulin subtype 2 / Immunoglobulin C-2 Type / Fibronectin type-III domain profile. / Fibronectin type III / Fibronectin type III superfamily / Leucine-rich repeat domain superfamily / Immunoglobulin subtype / Immunoglobulin / Ig-like domain profile. / Immunoglobulin-like domain / Immunoglobulin-like domain superfamily / Immunoglobulin-like fold
Similarity search - Domain/homology
Leucine-rich repeat and fibronectin type-III domain-containing protein 4
Similarity search - Component
Biological speciesMus musculus (house mouse)
CitationDate: 2018 Jun 12
Title: The structure of SALM5 suggests a dimeric assembly for the presynaptic RPTP ligand recognition
Authors: Karki S / Paudel P / Sele C / Shkumatov A
Contact author
  • Alexander Shkumatov (VUB, Vrije Universiteit Brussel, Pleinlaan 2 1050 Brussel)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Models

Model #1732
Type: dummy / Software: (r9684) / Radius of dummy atoms: 4.50 A / Symmetry: P1 / Comment: averaged (damstart.pdb) refined model / Chi-square value: 0.942 / P-value: 0.000298
Search similar-shape structures of this assembly by Omokage search (details)
Model #1733
Type: atomic / Software: (r9684) / Radius of dummy atoms: 1.90 A / Symmetry: P2 / Chi-square value: 2.200 / P-value: 0.000042
Search similar-shape structures of this assembly by Omokage search (details)
Model #1734
Type: atomic / Software: (r9684) / Radius of dummy atoms: 1.90 A / Symmetry: P2 / Chi-square value: 2.200 / P-value: 0.000042
Search similar-shape structures of this assembly by Omokage search (details)
Model #1735
Type: atomic / Software: (r9684) / Radius of dummy atoms: 1.90 A / Symmetry: P2 / Chi-square value: 2.200 / P-value: 0.000042
Search similar-shape structures of this assembly by Omokage search (details)
Model #1736
Type: atomic / Software: (r9684) / Radius of dummy atoms: 1.90 A / Symmetry: P2 / Chi-square value: 2.200 / P-value: 0.000042
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: Leucine-rich repeat and fibronectin type-III domain-containing protein 4: Fragment SALM3 LRR-Ig-Fn
Specimen concentration: 22.3 mg/ml
BufferName: 20 mM Tris HCl, 100 mM NaCl, 0.02% NaN3, / pH: 7.5
Entity #945Name: LRR-Ig-Fn / Type: protein
Description: Leucine-rich repeat and fibronectin type-III domain-containing protein 4
Formula weight: 54.616 / Num. of mol.: 2 / Source: Mus musculus / References: UniProt: Q80XU8
Sequence: MDKLCPLPCV CQNLSESLST LCAHRGLLFV PPNVDRRTVE LRLADNFIQA LGPPDFRNMT GLVDLTLSRN AITRIGARSF GDLESLRSLH LDGNRLVELG SSSLRGPVNL QHLILSGNQL GRIAPGAFDD FLDSLEDLDV SYNNLRQVPW AGIGSMPALH TLNLDHNLID ...Sequence:
MDKLCPLPCV CQNLSESLST LCAHRGLLFV PPNVDRRTVE LRLADNFIQA LGPPDFRNMT GLVDLTLSRN AITRIGARSF GDLESLRSLH LDGNRLVELG SSSLRGPVNL QHLILSGNQL GRIAPGAFDD FLDSLEDLDV SYNNLRQVPW AGIGSMPALH TLNLDHNLID ALPPGVFAQL SQLSRLDLTS NRLATLAPDP LFSRGRDAEA SPSPLVLSFS GNPLHCNCEL LWLRRLARPD DLETCASPPT LAGRYFWAVP EGEFSCEPPL IARHTQRLWV LEGQRATLRC RALGDPVPTM HWVGPDDRLV GNSSRAWAFP NGTLEIGVTG AGDAGAYTCI ATNPAGEATA RVELRVLALP HGGNTSAEGG RPGPSDIAAS ARTAAEGEGT LESEPAVQVT EVTATSGLVS WGLGRPADPV WMFQIQYNSS EDETLIYRIV PASSHHFLLK HLVPGADYDL CLLALSPAAG PSDLTATRLL GCAHFSTLPA TPLCHALQYP GILEVLFQ

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Experimental information

BeamInstrument name: ESRF BM29 / City: Grenoble / 国: France / Type of source: X-ray synchrotron / Wavelength: 0.09919 Å / Dist. spec. to detc.: 2.867 mm
DetectorName: Pilatus 1M
Scan
Title: Leucine-rich repeat and fibronectin type-III domain-containing protein 4: Fragment SALM3 LRR-Ig-Fn
Measurement date: Mar 11, 2017 / Storage temperature: 4.7 °C / Cell temperature: 4.7 °C / Exposure time: 1 sec. / Number of frames: 1 / Unit: 1/nm /
MinMax
Q0.0928 3.504
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 330 /
MinMax
Q0.121019 1.66902
P(R) point1 330
R0 17.09
Result
Type of curve: sec /
ExperimentalPorod
MW215 kDa184.5 kDa
Volume-313 nm3

P(R)P(R) errorGuinierGuinier error
Forward scattering, I042.32 0.05 42.19 0.076
Radius of gyration, Rg4.856 nm0.01 4.79 nm0.01

MinMaxError
D-17.09 1.5
Guinier point17 39 -

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