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- SASDCR6: Rap guanine nucleotide exchange factor 3 (isoform3) - binary form... -

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Basic information

Entry
Database: SASBDB / ID: SASDCR6
SampleRap guanine nucleotide exchange factor 3 (isoform3) - binary form with cAMP
  • Rap guanine nucleotide exchange factor 3 (dimer) (protein), EPAC1B (dimer), Homo sapiens
Function / homologyIsoform 3 of Rap guanine nucleotide exchange factor 3
Function and homology information
Biological speciesHomo sapiens (human)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Models

Model #1147
Type: atomic / Radius of dummy atoms: 1.90 A / Symmetry: P2 / Comment: 4xf7 combined with SwissModel 3CF6 / Chi-square value: 1.0201 / P-value: 0.329100
Search similar-shape structures of this assembly by Omokage search (details)
Model #1148
Type: dummy / Radius of dummy atoms: 12.00 A / Symmetry: P2 / Comment: SAXNS_DAMMIF / Chi-square value: 0.917764 / P-value: 0.503500
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: Rap guanine nucleotide exchange factor 3 (isoform3) - binary form with cAMP
Specimen concentration: 4.00-4.00
BufferName: 1mM EDTA, 10mM DTT, 500mM NaCl, 1mM cAMP, and 10mM Tris
pH: 9
Entity #766Name: EPAC1B (dimer) / Type: protein
Description: Rap guanine nucleotide exchange factor 3 (dimer)
Formula weight: 100.001 / Num. of mol.: 2 / Source: Homo sapiens / References: UniProt: O95398-3
Sequence: GSPGIRVLVL RRMHRPRSCS YQLLLEHQRP SCIQGLRWTP LTNSEESLDF SESLEQASTE RVLRAGRQLH RHLLATCPNL IRDRKYHLRL YRQCCSGREL VDGILALGLG VHSRSQVVGI CQVLLDEGAL CHVKHDWAFQ DRDAQFYRFP GPEPEPVGTH EMEEELAEAV ...Sequence:
GSPGIRVLVL RRMHRPRSCS YQLLLEHQRP SCIQGLRWTP LTNSEESLDF SESLEQASTE RVLRAGRQLH RHLLATCPNL IRDRKYHLRL YRQCCSGREL VDGILALGLG VHSRSQVVGI CQVLLDEGAL CHVKHDWAFQ DRDAQFYRFP GPEPEPVGTH EMEEELAEAV ALLSQRGPDA LLTVALRKPP GQRTDEELDL IFEELLHIKA VAHLSNSVKR ELAAVLLFEP HSKAGTVLFS QGDKGTSWYI IWKGSVNVVT HGKGLVTTLH EGDDFGQLAL VNDAPRAATI ILREDNCHFL RVDKQDFNRI IKDVEAKTMR LEEHGKVVLV LERASQGAGP SRPPTPGRNR YTVMSGTPEK ILELLLEAMG PDSSAHDPTE TFLSDFLLTH RVFMPSAQLC AALLHHFHVE PAGGSEQERS TYVCNKRQQI LRLVSQWVAL YGSMLHTDPV ATSFLQKLSD LVGRDTRLSN LLREQWPERR RCHRLENGCG NASPQMKARN LPVWLPNQDE PLPGSSCAIQ VGDKVPYDIC RPDHSVLTLQ LPVTASVREV MAALAQEDGW TKGQVLVKVN SAGDAIGLQP DARGVATSLG LNERLFVVNP QEVHELIPHP DQLGPTVGSA EGLDLVSAKD LAGQLTDHDW SLFNSIHQVE LIHYVLGPQH LRDVTTANLE RFMRRFNELQ YWVATELCLC PVPGPRAQLL RKFIKLAAHL KEQKNLNSFF AVMFGLSNSA ISRLAHTWER LPHKVRKLYS ALERLLDPSW NHRVYRLALA KLSPPVIPFM PLLLKDMTFI HEGNHTLVEN LINFEKMRMM ARAARMLHHC RSHNPVPLSP LRSRVSHLHE DSQVARISTC SEQSLSTRSP ASTWAYVQQL KVIDNQRELS RLSRELEP

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Experimental information

BeamInstrument name: Sealy Center For Structural Biology, UTMB-G Rigaku BioSAXS-1000
City: Galveston, TX / 国: USA / Type of source: X-ray in house / Wavelength: 0.15418 Å / Dist. spec. to detc.: 0.489 mm
DetectorName: Rigaku BioSAXS-1000 / Type: Kratky-2D / Pixsize x: 0.001 mm
Scan
Title: Rap guanine nucleotide exchange factor 3 (isoform3) - binary form with cAMP
Measurement date: Jan 30, 2012 / Storage temperature: 10 °C / Cell temperature: 10 °C / Exposure time: 1800 sec. / Number of frames: 4 / Unit: 1/A /
MinMax
Q0.0137 0.6804
Distance distribution function P(R)
Sofotware P(R): GNOM 4.6 / Number of points: 180 /
MinMax
Q0.01371 0.2692
P(R) point1 180
R0 157
Result
Type of curve: single_conc
ExperimentalStandardPorod
MW178 kDa178 kDa260 kDa
Volume--415 nm3

P(R)P(R) errorGuinierGuinier error
Forward scattering, I01.868 0.01664 1.973 0.032
Radius of gyration, Rg5.15 nm0.03 5.32 nm0.07

MinMax
D-15.7
Guinier point1 12

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