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- SASDD23: Leucine-rich repeat and fibronectin type-III domain-containing pr... -

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Basic information

Entry
Database: SASBDB / ID: SASDD23
SampleLeucine-rich repeat and fibronectin type-III domain-containing protein 5: Fragment SALM5 LRR-Ig
  • Leucine-rich repeat and fibronectin type-III domain-containing protein 5 (protein), LRR-Ig-FN, Mus musculus
Function / homology
Function and homology information


negative regulation of macrophage activation / synaptic membrane adhesion / regulation of presynapse assembly / postsynaptic density membrane / GABA-ergic synapse / negative regulation of inflammatory response / glutamatergic synapse / cell surface
Similarity search - Function
: / Immunoglobulin I-set / Immunoglobulin I-set domain / Leucine rich repeat / Leucine-rich repeat, typical subtype / Leucine-rich repeats, typical (most populated) subfamily / Leucine-rich repeat profile. / Leucine-rich repeat / Immunoglobulin subtype 2 / Immunoglobulin C-2 Type ...: / Immunoglobulin I-set / Immunoglobulin I-set domain / Leucine rich repeat / Leucine-rich repeat, typical subtype / Leucine-rich repeats, typical (most populated) subfamily / Leucine-rich repeat profile. / Leucine-rich repeat / Immunoglobulin subtype 2 / Immunoglobulin C-2 Type / Fibronectin type III superfamily / Leucine-rich repeat domain superfamily / Immunoglobulin subtype / Immunoglobulin / Ig-like domain profile. / Immunoglobulin-like domain / Immunoglobulin-like domain superfamily / Immunoglobulin-like fold
Similarity search - Domain/homology
Leucine-rich repeat and fibronectin type-III domain-containing protein 5
Similarity search - Component
Biological speciesMus musculus (house mouse)
CitationDate: 2018 Jun 12
Title: The structure of SALM5 suggests a dimeric assembly for the presynaptic RPTP ligand recognition
Authors: Karki S / Paudel P / Sele C / Shkumatov A
Contact author
  • Alexander Shkumatov (VUB, Vrije Universiteit Brussel, Pleinlaan 2 1050 Brussel)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Models

Model #1737
Type: dummy / Software: (r9684) / Radius of dummy atoms: 3.25 A / Symmetry: P1 / Comment: averaged (damstart.pdb) refined model / Chi-square value: 0.855
Search similar-shape structures of this assembly by Omokage search (details)
Model #1738
Type: atomic / Software: (r9684) / Radius of dummy atoms: 1.90 A / Symmetry: P2 / Chi-square value: 0.887
Search similar-shape structures of this assembly by Omokage search (details)
Model #1739
Type: atomic / Software: (r9684) / Radius of dummy atoms: 1.90 A / Symmetry: P2 / Chi-square value: 0.887
Search similar-shape structures of this assembly by Omokage search (details)
Model #1740
Type: atomic / Software: (r9684) / Radius of dummy atoms: 1.90 A / Chi-square value: 0.887
Search similar-shape structures of this assembly by Omokage search (details)
Model #1741
Type: atomic / Software: (r9684) / Radius of dummy atoms: 1.90 A / Symmetry: P2 / Chi-square value: 0.887
Search similar-shape structures of this assembly by Omokage search (details)
Model #1742
Type: atomic / Software: (r9684) / Radius of dummy atoms: 1.90 A / Symmetry: P2 / Chi-square value: 0.887
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: Leucine-rich repeat and fibronectin type-III domain-containing protein 5: Fragment SALM5 LRR-Ig
Specimen concentration: 1.00-5.00
BufferName: 30 mM Tris-Cl, 150 mM NaCl, 3% glycerol / pH: 7.5
Entity #946Name: LRR-Ig-FN / Type: protein
Description: Leucine-rich repeat and fibronectin type-III domain-containing protein 5
Formula weight: 41.018 / Num. of mol.: 2 / Source: Mus musculus / References: UniProt: Q8BXA0
Sequence: QICPKRCVCQ ILSPNLATLC AKKGLLFVPP NIDRRTVELR LADNFVTNIK RKDFANMTSL VDLTLSRNTI SFITPHAFAD LRNLRALHLN SNRLTKITND MFSGLSNLHH LILNNNQLTL ISSTAFDDVF ALEELDLSYN NLETIPWDAV EKMVSLHTLS LDHNMIDNIP ...Sequence:
QICPKRCVCQ ILSPNLATLC AKKGLLFVPP NIDRRTVELR LADNFVTNIK RKDFANMTSL VDLTLSRNTI SFITPHAFAD LRNLRALHLN SNRLTKITND MFSGLSNLHH LILNNNQLTL ISSTAFDDVF ALEELDLSYN NLETIPWDAV EKMVSLHTLS LDHNMIDNIP KGTFSHLHKM TRLDVTSNKL QKLPPDPLFQ RAQVLATSGI ISPSTFALSF GGNPLHCNCE LLWLRRLSRE DDLETCASPA LLTGRYFWSI PEEEFLCEPP LITRHTHEMR VLEGQRATLR CKARGDPEPA IHWISPEGKL ISNATRSLVY DNGTLDILIT TVKDTGAFTC IASNPAGEAT QTVDLHIIKG SEVLFQ

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Experimental information

BeamInstrument name: Diamond Light Source B21 / City: Oxfordshire / 国: UK / Shape: 1 x 5 mm / Type of source: X-ray synchrotron / Wavelength: 0.1005 Å / Dist. spec. to detc.: 4.036 mm
DetectorName: Pilatus 2M
Scan
Title: Leucine-rich repeat and fibronectin type-III domain-containing protein 5: Fragment SALM5 (LRR-Ig)
Measurement date: Jun 8, 2016 / Storage temperature: 15 °C / Cell temperature: 15 °C / Exposure time: 10 sec. / Number of frames: 18 / Unit: 1/A /
MinMax
Q0.0222 0.3501
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 691 /
MinMax
Q0.0207821 0.210443
P(R) point1 691
R0 135
Result
Type of curve: merged /
ExperimentalPorod
MW101 kDa91.1 kDa
Volume-155 nm3

P(R)P(R) errorGuinierGuinier error
Forward scattering, I00.00669 0.0001 0.006724 3.0E-5
Radius of gyration, Rg3.65 nm0.01 3.63 nm0.02

MinMaxError
D-13.5 1
Guinier point2 50 -

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