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- SASDDY2: Leucine-rich repeat and fibronectin type-III domain-containing pr... -

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Basic information

Entry
Database: SASBDB / ID: SASDDY2
SampleLeucine-rich repeat and fibronectin type-III domain-containing protein 4: Fragment SALM3 LRR-Ig
  • Leucine-rich repeat and fibronectin type-III domain-containing protein 4 (protein), LRR-Ig, Mus musculus
Function / homology
Function and homology information


Synaptic adhesion-like molecules / synaptic membrane adhesion / regulation of postsynaptic density assembly / regulation of presynapse assembly / GABA-ergic synapse / postsynaptic density membrane / glutamatergic synapse / cell surface
Similarity search - Function
: / Leucine Rich Repeat / Cysteine-rich flanking region, C-terminal / Leucine rich repeat C-terminal domain / Immunoglobulin I-set / Immunoglobulin I-set domain / Leucine rich repeat / Leucine-rich repeat, typical subtype / Leucine-rich repeats, typical (most populated) subfamily / Fibronectin type III domain ...: / Leucine Rich Repeat / Cysteine-rich flanking region, C-terminal / Leucine rich repeat C-terminal domain / Immunoglobulin I-set / Immunoglobulin I-set domain / Leucine rich repeat / Leucine-rich repeat, typical subtype / Leucine-rich repeats, typical (most populated) subfamily / Fibronectin type III domain / Leucine-rich repeat / Immunoglobulin subtype 2 / Immunoglobulin C-2 Type / Fibronectin type-III domain profile. / Fibronectin type III / Fibronectin type III superfamily / Leucine-rich repeat domain superfamily / Immunoglobulin subtype / Immunoglobulin / Ig-like domain profile. / Immunoglobulin-like domain / Immunoglobulin-like domain superfamily / Immunoglobulin-like fold
Similarity search - Domain/homology
Leucine-rich repeat and fibronectin type-III domain-containing protein 4
Similarity search - Component
Biological speciesMus musculus (house mouse)
CitationDate: 2018 Jun 12
Title: The structure of SALM5 suggests a dimeric assembly for the presynaptic RPTP ligand recognition
Authors: Karki S / Paudel P / Sele C / Shkumatov A
Contact author
  • Alexander Shkumatov (VUB, Vrije Universiteit Brussel, Pleinlaan 2 1050 Brussel)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Models

Model #1724
Type: dummy / Software: (r9684) / Radius of dummy atoms: 3.50 A / Symmetry: P1 / Comment: refinement of averaged (damstart.pdb) model / Chi-square value: 0.988 / P-value: 0.180658
Search similar-shape structures of this assembly by Omokage search (details)
Model #1726
Type: atomic / Software: (r9684) / Radius of dummy atoms: 1.90 A / Symmetry: P2 / Chi-square value: 1.153 / P-value: 0.041917
Search similar-shape structures of this assembly by Omokage search (details)
Model #1727
Type: atomic / Software: (r9684) / Radius of dummy atoms: 1.90 A / Symmetry: P2 / Chi-square value: 1.153 / P-value: 0.041917
Search similar-shape structures of this assembly by Omokage search (details)
Model #1728
Type: atomic / Software: (r9684) / Radius of dummy atoms: 1.90 A / Symmetry: P2 / Chi-square value: 1.153 / P-value: 0.041917
Search similar-shape structures of this assembly by Omokage search (details)
Model #1729
Type: atomic / Software: (r9684) / Radius of dummy atoms: 1.90 A / Symmetry: P2 / Chi-square value: 1.153 / P-value: 0.041917
Search similar-shape structures of this assembly by Omokage search (details)
Model #1730
Type: atomic / Software: (r9684) / Radius of dummy atoms: 1.90 A / Symmetry: P2 / Chi-square value: 1.153 / P-value: 0.041917
Search similar-shape structures of this assembly by Omokage search (details)
Model #1731
Type: atomic / Software: (r9684) / Radius of dummy atoms: 1.90 A / Symmetry: P2 / Chi-square value: 1.153 / P-value: 0.041917
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: Leucine-rich repeat and fibronectin type-III domain-containing protein 4: Fragment SALM3 LRR-Ig
Specimen concentration: 12 mg/ml
BufferName: 20 mM Tris HCl, 100 mM NaCl, 0.02% NaN3, / pH: 7.5
Entity #944Name: LRR-Ig / Type: protein
Description: Leucine-rich repeat and fibronectin type-III domain-containing protein 4
Formula weight: 39.603 / Num. of mol.: 2 / Source: Mus musculus / References: UniProt: Q80XU8
Sequence: CPLPCVCQNL SESLSTLCAH RGLLFVPPNV DRRTVELRLA DNFIQALGPP DFRNMTGLVD LTLSRNAITR IGARSFGDLE SLRSLHLDGN RLVELGSSSL RGPVNLQHLI LSGNQLGRIA PGAFDDFLDS LEDLDVSYNN LRQVPWAGIG SMPALHTLNL DHNLIDALPP ...Sequence:
CPLPCVCQNL SESLSTLCAH RGLLFVPPNV DRRTVELRLA DNFIQALGPP DFRNMTGLVD LTLSRNAITR IGARSFGDLE SLRSLHLDGN RLVELGSSSL RGPVNLQHLI LSGNQLGRIA PGAFDDFLDS LEDLDVSYNN LRQVPWAGIG SMPALHTLNL DHNLIDALPP GVFAQLSQLS RLDLTSNRLA TLAPDPLFSR GRDAEASPSP LVLSFSGNPL HCNCELLWLR RLARPDDLET CASPPTLAGR YFWAVPEGEF SCEPPLIARH TQRLWVLEGQ RATLRCRALG DPVPTMHWVG PDDRLVGNSS RAWAFPNGTL EIGVTGAGDA GAYTCIATNP AGEATARVEL RVLALGTRGS EVLFQ

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Experimental information

BeamInstrument name: ESRF BM29 / City: Grenoble / 国: France / Type of source: X-ray synchrotron / Wavelength: 0.09919 Å / Dist. spec. to detc.: 2.867 mm
DetectorName: Pilatus 1M
Scan
Title: Leucine-rich repeat and fibronectin type-III domain-containing protein 4: Fragment SALM3 LRR-Ig
Measurement date: Jul 13, 2017 / Storage temperature: 4.7 °C / Cell temperature: 4.7 °C / Exposure time: 1 sec. / Number of frames: 1 / Unit: 1/nm /
MinMax
Q0.154 3.504
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 415 /
MinMax
Q0.191597 2.13954
P(R) point1 415
R0 12.13
Result
Type of curve: sec /
ExperimentalPorod
MW113 kDa101.4 kDa
Volume-182.6 nm3

P(R)P(R) errorGuinierGuinier error
Forward scattering, I017.56 0.1 17.51 0.04
Radius of gyration, Rg3.753 nm0.01 3.74 nm0.01

MinMaxError
D-12.13 1
Guinier point13 42 -

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