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Yorodumi- PDB-8t31: Crystal structure of GABARAP in complex with the LIR of TP53INP2/DOR -
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Open data
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Basic information
| Entry | Database: PDB / ID: 8t31 | ||||||
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| Title | Crystal structure of GABARAP in complex with the LIR of TP53INP2/DOR | ||||||
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Keywords | PROTEIN BINDING / Autophagy / GABARAP selectivity / DOR LIR / TP53INP2 LIR | ||||||
| Function / homology | Function and homology informationnegative regulation of protein localization / positive regulation of protein K48-linked ubiquitination / regulation of Rac protein signal transduction / tissue homeostasis / GABA receptor binding / phosphatidylethanolamine binding / TBC/RABGAPs / cellular response to nitrogen starvation / microtubule associated complex / Macroautophagy ...negative regulation of protein localization / positive regulation of protein K48-linked ubiquitination / regulation of Rac protein signal transduction / tissue homeostasis / GABA receptor binding / phosphatidylethanolamine binding / TBC/RABGAPs / cellular response to nitrogen starvation / microtubule associated complex / Macroautophagy / regulation of neurotransmitter receptor localization to postsynaptic specialization membrane / smooth endoplasmic reticulum / autophagosome membrane / extrinsic apoptotic signaling pathway via death domain receptors / autophagosome maturation / autophagosome assembly / axoneme / beta-tubulin binding / protein targeting / mitophagy / sperm midpiece / autophagosome / ubiquitin binding / PML body / GABA-ergic synapse / microtubule cytoskeleton organization / osteoblast differentiation / intracellular protein localization / positive regulation of proteasomal ubiquitin-dependent protein catabolic process / actin cytoskeleton / protein transport / cytoplasmic vesicle / ubiquitin-dependent protein catabolic process / microtubule binding / chemical synaptic transmission / microtubule / lysosome / Golgi membrane / intracellular membrane-bounded organelle / ubiquitin protein ligase binding / positive regulation of DNA-templated transcription / nucleus / plasma membrane / cytosol Similarity search - Function | ||||||
| Biological species | Homo sapiens (human) | ||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.096 Å | ||||||
Authors | Ali, M.G.H. / Wahba, H.M. / Cyr, N. / Omichinski, J.G. | ||||||
| Funding support | Canada, 1items
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Citation | Journal: Autophagy / Year: 2024Title: Structural and functional characterization of the role of acetylation on the interactions of the human Atg8-family proteins with the autophagy receptor TP53INP2/DOR. Authors: Ali, M.G. / Wahba, H.M. / Igelmann, S. / Cyr, N. / Ferbeyre, G. / Omichinski, J.G. | ||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 8t31.cif.gz | 278.7 KB | Display | PDBx/mmCIF format |
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| PDB format | pdb8t31.ent.gz | 228.9 KB | Display | PDB format |
| PDBx/mmJSON format | 8t31.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 8t31_validation.pdf.gz | 496.3 KB | Display | wwPDB validaton report |
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| Full document | 8t31_full_validation.pdf.gz | 502.3 KB | Display | |
| Data in XML | 8t31_validation.xml.gz | 24.4 KB | Display | |
| Data in CIF | 8t31_validation.cif.gz | 34 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/t3/8t31 ftp://data.pdbj.org/pub/pdb/validation_reports/t3/8t31 | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 8t32C ![]() 8t33C ![]() 8t35C ![]() 8t36C ![]() 8t4tC C: citing same article ( |
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| Similar structure data | Similarity search - Function & homology F&H Search |
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Assembly
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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About Yorodumi



Homo sapiens (human)
X-RAY DIFFRACTION
Canada, 1items
Citation







PDBj







