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- PDB-7w2h: A double cysteine variant of the sigma-1 receptor from Xenopus la... -

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基本情報

登録情報
データベース: PDB / ID: 7w2h
タイトルA double cysteine variant of the sigma-1 receptor from Xenopus laevis complexed with S1RA
要素Sigma non-opioid intracellular receptor 1
キーワードMEMBRANE PROTEIN / sigma receptor / membrane receptor / S1R / ligand entry
機能・相同性
機能・相同性情報


nuclear outer membrane / nuclear inner membrane / lipid transport / cytoplasmic vesicle / endoplasmic reticulum membrane / endoplasmic reticulum / membrane
類似検索 - 分子機能
ERG2/sigma1 receptor-like / ERG2 and Sigma1 receptor like protein
類似検索 - ドメイン・相同性
Chem-88E / Sigma non-opioid intracellular receptor 1
類似検索 - 構成要素
生物種Xenopus laevis (アフリカツメガエル)
手法X線回折 / シンクロトロン / 分子置換 / 解像度: 3.796 Å
データ登録者Meng, F. / Sun, Z. / Zhou, X.
資金援助 中国, 1件
組織認可番号国
National Natural Science Foundation of China (NSFC)31770783 中国
引用ジャーナル: Nat Commun / 年: 2022
タイトル: An open-like conformation of the sigma-1 receptor reveals its ligand entry pathway.
著者: Meng, F. / Xiao, Y. / Ji, Y. / Sun, Z. / Zhou, X.
履歴
登録2021年11月23日登録サイト: PDBJ / 処理サイト: PDBJ
改定 1.02022年3月16日Provider: repository / タイプ: Initial release
改定 1.12022年3月23日Group: Database references / カテゴリ: citation / citation_author
Item: _citation.journal_volume / _citation.page_first ..._citation.journal_volume / _citation.page_first / _citation.page_last / _citation.pdbx_database_id_PubMed / _citation_author.identifier_ORCID
改定 1.22023年11月29日Group: Data collection / Refinement description
カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / pdbx_initial_refinement_model / struct_ncs_dom_lim
Item: _struct_ncs_dom_lim.beg_auth_comp_id / _struct_ncs_dom_lim.beg_label_asym_id ..._struct_ncs_dom_lim.beg_auth_comp_id / _struct_ncs_dom_lim.beg_label_asym_id / _struct_ncs_dom_lim.beg_label_comp_id / _struct_ncs_dom_lim.beg_label_seq_id / _struct_ncs_dom_lim.end_auth_comp_id / _struct_ncs_dom_lim.end_label_asym_id / _struct_ncs_dom_lim.end_label_comp_id / _struct_ncs_dom_lim.end_label_seq_id

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構造の表示

構造ビューア分子:
MolmilJmol/JSmol

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集合体

登録構造単位
A: Sigma non-opioid intracellular receptor 1
C: Sigma non-opioid intracellular receptor 1
E: Sigma non-opioid intracellular receptor 1
B: Sigma non-opioid intracellular receptor 1
D: Sigma non-opioid intracellular receptor 1
F: Sigma non-opioid intracellular receptor 1
G: Sigma non-opioid intracellular receptor 1
H: Sigma non-opioid intracellular receptor 1
I: Sigma non-opioid intracellular receptor 1
J: Sigma non-opioid intracellular receptor 1
K: Sigma non-opioid intracellular receptor 1
L: Sigma non-opioid intracellular receptor 1
M: Sigma non-opioid intracellular receptor 1
N: Sigma non-opioid intracellular receptor 1
O: Sigma non-opioid intracellular receptor 1
P: Sigma non-opioid intracellular receptor 1
Q: Sigma non-opioid intracellular receptor 1
R: Sigma non-opioid intracellular receptor 1
S: Sigma non-opioid intracellular receptor 1
T: Sigma non-opioid intracellular receptor 1
U: Sigma non-opioid intracellular receptor 1
V: Sigma non-opioid intracellular receptor 1
W: Sigma non-opioid intracellular receptor 1
X: Sigma non-opioid intracellular receptor 1
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)609,67549
ポリマ－601,23924
非ポリマー8,43525
水00
1
A: Sigma non-opioid intracellular receptor 1
C: Sigma non-opioid intracellular receptor 1
E: Sigma non-opioid intracellular receptor 1
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)76,1676
ポリマ－75,1553
非ポリマー1,0123
水0
タイプ名称対称操作数
identity operation1_555x,y,z1
Buried area5930 Å2
ΔGint-26 kcal/mol
Surface area28010 Å2
手法PISA
2
B: Sigma non-opioid intracellular receptor 1
D: Sigma non-opioid intracellular receptor 1
F: Sigma non-opioid intracellular receptor 1
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)76,1676
ポリマ－75,1553
非ポリマー1,0123
水0
タイプ名称対称操作数
identity operation1_555x,y,z1
Buried area5940 Å2
ΔGint-27 kcal/mol
Surface area28090 Å2
手法PISA
3
G: Sigma non-opioid intracellular receptor 1
H: Sigma non-opioid intracellular receptor 1
I: Sigma non-opioid intracellular receptor 1
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)76,1676
ポリマ－75,1553
非ポリマー1,0123
水0
タイプ名称対称操作数
identity operation1_555x,y,z1
Buried area5950 Å2
ΔGint-27 kcal/mol
Surface area28280 Å2
手法PISA
4
J: Sigma non-opioid intracellular receptor 1
K: Sigma non-opioid intracellular receptor 1
L: Sigma non-opioid intracellular receptor 1
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)76,1676
ポリマ－75,1553
非ポリマー1,0123
水0
タイプ名称対称操作数
identity operation1_555x,y,z1
Buried area5920 Å2
ΔGint-27 kcal/mol
Surface area28470 Å2
手法PISA
5
M: Sigma non-opioid intracellular receptor 1
N: Sigma non-opioid intracellular receptor 1
O: Sigma non-opioid intracellular receptor 1
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)76,1676
ポリマ－75,1553
非ポリマー1,0123
水0
タイプ名称対称操作数
identity operation1_555x,y,z1
Buried area5930 Å2
ΔGint-25 kcal/mol
Surface area26660 Å2
手法PISA
6
P: Sigma non-opioid intracellular receptor 1
Q: Sigma non-opioid intracellular receptor 1
R: Sigma non-opioid intracellular receptor 1
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)76,5057
ポリマ－75,1553
非ポリマー1,3504
水0
タイプ名称対称操作数
identity operation1_555x,y,z1
Buried area5950 Å2
ΔGint-27 kcal/mol
Surface area27540 Å2
手法PISA
7
S: Sigma non-opioid intracellular receptor 1
T: Sigma non-opioid intracellular receptor 1
U: Sigma non-opioid intracellular receptor 1
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)76,1676
ポリマ－75,1553
非ポリマー1,0123
水0
タイプ名称対称操作数
identity operation1_555x,y,z1
Buried area5920 Å2
ΔGint-25 kcal/mol
Surface area28150 Å2
手法PISA
8
V: Sigma non-opioid intracellular receptor 1
W: Sigma non-opioid intracellular receptor 1
X: Sigma non-opioid intracellular receptor 1
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)76,1676
ポリマ－75,1553
非ポリマー1,0123
水0
タイプ名称対称操作数
identity operation1_555x,y,z1
Buried area5920 Å2
ΔGint-26 kcal/mol
Surface area28450 Å2
手法PISA
単位格子
Length a, b, c (Å)134.453, 200.751, 160.593
Angle α, β, γ (deg.)90.000, 90.030, 90.000
Int Tables number4
Space group name H-MP1211
非結晶学的対称性 (NCS)NCSドメイン:
IDEns-ID詳細
11(chain A and (resid 22 through 217 or resid 301))
21(chain B and (resid 22 through 217 or resid 301))
31(chain C and (resid 22 through 217 or resid 301))
41(chain D and (resid 22 through 217 or resid 301))
51(chain E and (resid 22 through 217 or resid 301))
61(chain F and (resid 22 through 217 or resid 301))
71(chain G and (resid 22 through 217 or resid 301))
81(chain H and (resid 22 through 217 or resid 301))
91(chain I and (resid 22 through 217 or resid 301))
101(chain J and (resid 22 through 217 or resid 301))
111(chain K and (resid 22 through 217 or resid 301))
121(chain L and (resid 22 through 217 or resid 301))
131chain M
141(chain N and (resid 22 through 217 or resid 301))
151(chain O and (resid 22 through 217 or resid 301))
161(chain P and (resid 22 through 217 or resid 301))
171(chain Q and (resid 22 through 217 or resid 301))
181(chain R and (resid 22 through 217 or resid 301))
191(chain S and (resid 22 through 217 or resid 301))
201(chain T and (resid 22 through 217 or resid 301))
211(chain U and (resid 22 through 217 or resid 301))
221(chain V and (resid 22 through 217 or resid 301))
231(chain W and (resid 22 through 217 or resid 301))
241(chain X and (resid 22 through 217 or resid 301))

NCSドメイン領域:

Ens-ID: 1

Dom-IDComponent-IDBeg auth comp-IDBeg label comp-IDEnd auth comp-IDEnd label comp-IDSelection detailsAuth asym-IDLabel asym-IDAuth seq-IDLabel seq-ID
11LEULEUGLNGLN(chain A and (resid 22 through 217 or resid 301))AA22 - 21726 - 221
1288E88E88E88E(chain A and (resid 22 through 217 or resid 301))AY301
21LEULEUGLNGLN(chain B and (resid 22 through 217 or resid 301))BD22 - 21726 - 221
2288E88E88E88E(chain B and (resid 22 through 217 or resid 301))BBA301
31LEULEUGLNGLN(chain C and (resid 22 through 217 or resid 301))CB22 - 21726 - 221
3288E88E88E88E(chain C and (resid 22 through 217 or resid 301))CZ301
41LEULEUGLNGLN(chain D and (resid 22 through 217 or resid 301))DE22 - 21726 - 221
4288E88E88E88E(chain D and (resid 22 through 217 or resid 301))DCA301
51LEULEUGLNGLN(chain E and (resid 22 through 217 or resid 301))EC22 - 21726 - 221
5288E88E88E88E(chain E and (resid 22 through 217 or resid 301))EAA301
61LEULEUGLNGLN(chain F and (resid 22 through 217 or resid 301))FF22 - 21726 - 221
6288E88E88E88E(chain F and (resid 22 through 217 or resid 301))FDA301
71LEULEUGLNGLN(chain G and (resid 22 through 217 or resid 301))GG22 - 21726 - 221
7288E88E88E88E(chain G and (resid 22 through 217 or resid 301))GEA301
81LEULEUGLNGLN(chain H and (resid 22 through 217 or resid 301))HH22 - 21726 - 221
8288E88E88E88E(chain H and (resid 22 through 217 or resid 301))HFA301
91LEULEUGLNGLN(chain I and (resid 22 through 217 or resid 301))II22 - 21726 - 221
9288E88E88E88E(chain I and (resid 22 through 217 or resid 301))IGA301
101LEULEUGLNGLN(chain J and (resid 22 through 217 or resid 301))JJ22 - 21726 - 221
10288E88E88E88E(chain J and (resid 22 through 217 or resid 301))JHA301
111LEULEUGLNGLN(chain K and (resid 22 through 217 or resid 301))KK22 - 21726 - 221
11288E88E88E88E(chain K and (resid 22 through 217 or resid 301))KIA301
121LEULEUGLNGLN(chain L and (resid 22 through 217 or resid 301))LL22 - 21726 - 221
12288E88E88E88E(chain L and (resid 22 through 217 or resid 301))LJA301
131LEULEUGLNGLNchain MMM22 - 21726 - 221
141LEULEUGLNGLN(chain N and (resid 22 through 217 or resid 301))NN22 - 21726 - 221
14288E88E88E88E(chain N and (resid 22 through 217 or resid 301))NLA301
151LEULEUGLNGLN(chain O and (resid 22 through 217 or resid 301))OO22 - 21726 - 221
15288E88E88E88E(chain O and (resid 22 through 217 or resid 301))OMA301
161LEULEUGLNGLN(chain P and (resid 22 through 217 or resid 301))PP22 - 21726 - 221
16288E88E88E88E(chain P and (resid 22 through 217 or resid 301))PNA301
171LEULEUGLNGLN(chain Q and (resid 22 through 217 or resid 301))QQ22 - 21726 - 221
17288E88E88E88E(chain Q and (resid 22 through 217 or resid 301))QPA301
181LEULEUGLNGLN(chain R and (resid 22 through 217 or resid 301))RR22 - 21726 - 221
18288E88E88E88E(chain R and (resid 22 through 217 or resid 301))RQA301
191LEULEUGLNGLN(chain S and (resid 22 through 217 or resid 301))SS22 - 21726 - 221
19288E88E88E88E(chain S and (resid 22 through 217 or resid 301))SRA301
201LEULEUGLNGLN(chain T and (resid 22 through 217 or resid 301))TT22 - 21726 - 221
20288E88E88E88E(chain T and (resid 22 through 217 or resid 301))TSA301
211LEULEUGLNGLN(chain U and (resid 22 through 217 or resid 301))UU22 - 21726 - 221
21288E88E88E88E(chain U and (resid 22 through 217 or resid 301))UTA301
221LEULEUGLNGLN(chain V and (resid 22 through 217 or resid 301))VV22 - 21726 - 221
22288E88E88E88E(chain V and (resid 22 through 217 or resid 301))VUA301
231LEULEUGLNGLN(chain W and (resid 22 through 217 or resid 301))WW22 - 21726 - 221
23288E88E88E88E(chain W and (resid 22 through 217 or resid 301))WVA301
241LEULEUGLNGLN(chain X and (resid 22 through 217 or resid 301))XX22 - 21726 - 221
24288E88E88E88E(chain X and (resid 22 through 217 or resid 301))XWA301

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要素

#1: タンパク質 ...
Sigma non-opioid intracellular receptor 1 / Sigma 1-type opioid receptor / Sigma1-receptor / Sigma1R


分子量: 25051.635 Da / 分子数: 24 / 変異: L183C/Y207C / 由来タイプ: 組換発現
由来: (組換発現) Xenopus laevis (アフリカツメガエル)
遺伝子: sigmar1, oprs1 / 発現宿主: Komagataella pastoris (菌類) / 参照: UniProt: Q6DCU6
#2: 化合物...
ChemComp-88E / 4-[2-(5-methyl-1-naphthalen-2-yl-pyrazol-3-yl)oxyethyl]morpholine / S1RA


分子量: 337.416 Da / 分子数: 25 / 由来タイプ: 合成 / 式: C20H23N3O2 / タイプ: SUBJECT OF INVESTIGATION / コメント: アンタゴニスト*YM
研究の焦点であるリガンドがあるかY

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実験情報

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実験

実験手法: X線回折 / 使用した結晶の数: 1

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試料調製

結晶マシュー密度: 3.6 Å3/Da / 溶媒含有率: 65.88 %
結晶化温度: 293.15 K / 手法: 蒸気拡散法, シッティングドロップ法 / pH: 6.5
詳細: 0.05M ADA pH 6.5, 24% PEG 400, 1mM octyl-maltoside fluorinated, 0.4mM PRE084, 2mM S1RA soaking

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データ収集

回折平均測定温度: 100 K / Serial crystal experiment: N
放射光源由来: シンクロトロン / サイト: SSRF / ビームライン: BL19U1 / 波長: 0.9785 Å
検出器タイプ: DECTRIS PILATUS3 6M / 検出器: PIXEL / 日付: 2021年7月23日
放射プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray
放射波長波長: 0.9785 Å / 相対比: 1
反射解像度: 3.796→19.853 Å / Num. obs: 67737 / % possible obs: 81.1 % / 冗長度: 2.6 % / Biso Wilson estimate: 71.89 Å2 / CC1/2: 0.989 / Rmerge(I) obs: 0.159 / Rpim(I) all: 0.11 / Rrim(I) all: 0.194 / Net I/σ(I): 4.8 / Num. measured all: 177199
反射 シェル

Diffraction-ID: 1

解像度 (Å)冗長度 (%)Rmerge(I) obsNum. measured allNum. unique obsCC1/2Rpim(I) allRrim(I) allNet I/σ(I) obs% possible all
3.796-3.8612.40.431809434100.8530.3130.5361.981.9
9.884-19.8532.70.041874932400.9980.0280.0512.676.1

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位相決定

位相決定手法: 分子置換

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解析

ソフトウェア
名称バージョン分類
XDSBUILT 20210323データ削減
Aimless0.7.4データスケーリング
PHASER位相決定
PHENIX1.13_2998精密化
PDB_EXTRACT3.27データ抽出
精密化構造決定の手法: 分子置換
開始モデル: 5HK1

5hk1


解像度: 3.796→19.853 Å / SU ML: 0.58 / 交差検証法: THROUGHOUT / σ(F): 1.35 / 位相誤差: 37.32 / 立体化学のターゲット値: ML
Rfactor反射数%反射
Rfree0.3178 3336 4.94 %
Rwork0.2833 64192 -
obs0.2851 67528 80.81 %
溶媒の処理減衰半径: 0.9 Å / VDWプローブ半径: 1.11 Å / 溶媒モデル: FLAT BULK SOLVENT MODEL
原子変位パラメータBiso max: 171.77 Å2 / Biso mean: 82.2975 Å2 / Biso min: 35.69 Å2
精密化ステップサイクル: final / 解像度: 3.796→19.853 Å
タンパク質核酸リガンド溶媒全体
原子数39716 0 625 0 40341
Biso mean--78.22 --
残基数----5054
Refine LS restraints NCS
Ens-IDDom-IDAuth asym-ID数Refine-IDRmsタイプ
11A22763X-RAY DIFFRACTION3.466TORSIONAL
12B22763X-RAY DIFFRACTION3.466TORSIONAL
13C22763X-RAY DIFFRACTION3.466TORSIONAL
14D22763X-RAY DIFFRACTION3.466TORSIONAL
15E22763X-RAY DIFFRACTION3.466TORSIONAL
16F22763X-RAY DIFFRACTION3.466TORSIONAL
17G22763X-RAY DIFFRACTION3.466TORSIONAL
18H22763X-RAY DIFFRACTION3.466TORSIONAL
19I22763X-RAY DIFFRACTION3.466TORSIONAL
110J22763X-RAY DIFFRACTION3.466TORSIONAL
111K22763X-RAY DIFFRACTION3.466TORSIONAL
112L22763X-RAY DIFFRACTION3.466TORSIONAL
113M22763X-RAY DIFFRACTION3.466TORSIONAL
114N22763X-RAY DIFFRACTION3.466TORSIONAL
115O22763X-RAY DIFFRACTION3.466TORSIONAL
116P22763X-RAY DIFFRACTION3.466TORSIONAL
117Q22763X-RAY DIFFRACTION3.466TORSIONAL
118R22763X-RAY DIFFRACTION3.466TORSIONAL
119S22763X-RAY DIFFRACTION3.466TORSIONAL
120T22763X-RAY DIFFRACTION3.466TORSIONAL
121U22763X-RAY DIFFRACTION3.466TORSIONAL
122V22763X-RAY DIFFRACTION3.466TORSIONAL
123W22763X-RAY DIFFRACTION3.466TORSIONAL
124X22763X-RAY DIFFRACTION3.466TORSIONAL
LS精密化 シェル

Refine-ID: X-RAY DIFFRACTION / Rfactor Rfree error: 0

解像度 (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection Rwork% reflection obs (%)
3.796-3.84950.36321350.3321266981
3.8495-3.90650.37981510.33277484
3.9065-3.96710.37871410.3186275283
3.9671-4.03160.31781110.3186277383
4.0316-4.10050.29941510.304270483
4.1005-4.17440.37661330.2932268482
4.1744-4.25390.32651360.288270182
4.2539-4.33990.33961520.2883265280
4.3399-4.43320.34841410.2768266382
4.4332-4.53520.33311390.2675273282
4.5352-4.64720.34741480.286273482
4.6472-4.77110.33191100.2758275783
4.7711-4.90950.28271520.2749267382
4.9095-5.06540.31331560.2657265281
5.0654-5.24320.35031750.2856268182
5.2432-5.4490.29941240.2825269281
5.449-5.69140.35481470.3037268181
5.6914-5.98370.32711390.2902266380
5.9837-6.3470.30581450.3165262779
6.347-6.81860.30381240.2789260979
6.8186-7.47140.23271200.2634268280
7.4714-8.4780.23961330.2319259778
8.478-10.41790.23771410.242257077
10.4179-19.8530.32811320.2796247073
精密化 TLS

手法: refined / Refine-ID: X-RAY DIFFRACTION

IDL11 (°2)L12 (°2)L13 (°2)L22 (°2)L23 (°2)L33 (°2)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T11 (Å2)T12 (Å2)T13 (Å2)T22 (Å2)T23 (Å2)T33 (Å2)Origin x (Å)Origin y (Å)Origin z (Å)
1-0.00830.0042-0.00610.04220.05410.06040.23850.05040.06710.1036-0.0025-0.06650.3381-0.424901.06850.17840.26131.15770.00680.567720.3569-18.681690.2424
21.7950.9981-0.82970.7578-0.4470.45470.59770.39030.39330.0748-0.12290.3473-0.1899-0.07020.25090.7588-0.1625-0.11051.0375-0.23210.311827.676-50.21682.4789
30.32370.2208-0.53390.2183-0.45351.3231-0.33490.52290.28540.39380.23660.2093-0.3868-0.70520.01270.5179-0.13640.06860.377-0.07990.67330.9667-40.294777.2267
40.03530.0803-0.02370.165-0.040.0139-0.20580.1101-0.0418-0.18230.0266-0.0983-0.0154-0.0166-0.14430.5393-0.2868-0.4371.1698-0.35631.15972.6446-44.534552.0928
50.57650.1694-0.25971.5553-0.77940.4407-0.187-0.0058-0.1951-0.1714-0.504-0.35590.3998-0.1762-0.3280.8450.29390.33450.74460.0460.408732.1758-52.961537.8868
60.3160.4487-0.08680.6115-0.11080.0210.0712-0.65650.3105-0.09130.0069-0.05130.0566-0.0710.26110.2864-0.3534-0.0641.2119-0.18340.457536.4136-40.626737.8413
70.00650.08930.04780.96360.41030.1792-0.22830.21880.08430.54650.0434-0.16390.2537-0.1816-0.05060.3465-0.1590.01281.04380.01490.511933.113-48.160452.0516
80.0403-0.0029-0.0264-0.00580.0020.008-0.0166-0.2018-0.28660.0126-0.21410.0648-0.68970.0921-0.00010.69990.2008-0.18971.1216-0.11560.648726.4284-32.544143.1399
90.0993-0.1384-0.29680.18640.41660.89920.1944-0.0997-0.00470.0085-0.1073-0.0047-0.30050.41450.12581.105-0.3809-0.34280.56970.38780.985637.3731-4.121847.3985
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950.21940.04280.04230.0010.030.13090.0803-0.1043-0.01940.01390.1106-0.1842-0.09680.05410.1151.0967-0.3314-0.43690.4396-0.28370.658311.7263-72.899694.9686
960.6522-0.3341-0.04190.40190.25740.2124-0.1103-0.18810.1170.125-0.10160.40670.1524-0.0006-0.22110.4637-0.1111-0.12110.3891-0.31470.540325.9177-73.507763.9836
970.22970.32170.04510.41950.08060.1905-0.1066-0.3186-0.05620.2606-0.12090.0375-0.46850.2976-0.42090.6236-0.3288-0.1342-0.09030.47180.213914.864-76.077567.4563
980.2620.1586-0.03680.2468-0.0056-0.01210.245-0.22690.21550.0041-0.2133-0.1934-0.04220.0701-0.05640.8691-0.3741-0.1757-0.4820.23760.24519.0418-70.644566.3186
990.2918-0.0324-0.49471.23610.46680.98490.1028-0.1033-0.29330.26840.42020.00310.0954-0.03271.45920.239-0.1639-0.67420.2290.20730.580220.9678-87.578872.5811
1000.00910.0338-0.01850.0587-0.05310.0338-0.2476-0.1357-0.23790.39920.12660.50920.18910.117-0.00241.0057-0.2664-0.2410.9746-0.05050.7645-11.5937-115.1319-20.158
1010.4396-0.07920.16510.2825-0.24790.2452-0.1348-0.34530.019-0.1209-0.24350.1-0.07030.582-0.07080.97290.18110.070.9222-0.20170.7525-0.6988-101.7306-0.8105
1020.13570.04130.0620.3384-0.19920.166-0.14620.14360.19960.0286-0.0818-0.1101-0.03850.1417-0.37340.21370.1269-0.16050.78430.59530.62688.7888-104.1254-2.5336
103-0.0027-0.0033-0.00990.05840.07340.0753-0.26180.3265-0.28070.29790.0846-0.0941-0.05460.193-0.00020.73530.01920.13240.69950.16070.75749.8693-104.2691-14.8759
1040.269-0.13330.01440.266-0.0160.07230.24590.06340.78120.0989-0.35890.2431-0.16480.0468-0.00340.5806-0.088-0.09480.29380.00240.7542-0.3643-98.5404-15.8498
1050.10740.15280.01940.24580.07210.0324-0.13190.0670.18310.0883-0.12160-0.3747-0.0302-0.51540.5930.0944-0.1270.24440.36620.5335-9.9773-89.0641-10.3468
1060.0242-0.02870.01960.0338-0.02290.02540.39780.1881-0.1537-0.2598-0.06040.13340.3558-0.0227-0.00040.89490.10970.0090.84750.110.7993-6.539-91.4976-15.4535
1070.9023-0.39050.19870.2112-0.17840.2958-0.08020.4449-0.3475-0.5618-0.1942-0.10980.5062-0.0942-0.01070.9914-0.36180.15450.5550.03080.68550.7832-98.735-22.4327
1080.0024-0.01060.00170.1417-0.0010.21680.0434-0.07970.0920.11060.02930.2220.27-0.00290.14560.78860.2810.02440.3061-0.1870.43449.519-110.6577-21.5461
1090.0586-0.0514-0.01820.04110.0180.09150.39640.46670.94340.15510.17930.0452-0.64460.33550.00180.4011-0.10550.20720.91090.01690.948628.9417-99.3148-40.7661
1100.1906-0.07940.24940.0854-0.09420.332-0.3622-0.02260.1375-0.0677-0.069-0.39860.0109-0.3239-0.04231.2289-0.44470.31581.5663-0.09711.26427.529-70.0636-27.8923
1110.1944-0.1309-0.2920.34890.24150.48140.49630.0184-0.3206-0.4294-0.0607-0.2014-0.9213-0.2994-0.01121.0325-0.23590.20661.59730.39860.960117.7399-65.0069-34.756
1120.1550.06230.11330.29240.17440.23670.07510.1184-0.069-0.40140.328-0.0658-0.64080.55780.06890.8472-0.10360.18361.71240.31660.844715.7919-78.4326-24.6725
1130.10010.00340.03730.0921-0.01190.0172-0.05390.0395-0.1015-0.21490.17430.0570.0017-0.08130.11521.3436-0.52130.18050.63940.36120.535513.7529-81.6691-22.0468
1140.0348-0.04850.01830.1163-0.08140.04160.17560.26710.1009-0.36260.0007-0.2068-0.150.04310.00220.8405-0.17540.18361.6473-0.10530.965611.9165-80.4796-34.26
1150.0363-0.05590.00550.06980.01010.02590.01290.01270.0737-0.07720.25180.0957-0.2868-0.07240.00011.1805-0.19040.04411.2458-0.20020.75816.4568-72.9654-46.1018
1160.47230.0615-0.38471.0459-0.1330.31360.20170.0462-0.0970.59250.27310.4928-0.07550.01290.08011.23870.123-0.24381.5224-0.14140.6942-11.5869-72.8162-57.3451
1170.07470.0834-0.0070.0758-0.0118-0.00170.08460.33160.0076-0.0697-0.1341-0.2927-0.0752-0.2932-0.00011.40590.040.43311.2242-0.04021.1025-24.5785-65.8295-28.6006
1180.1139-0.12440.13470.2071-0.25060.2833-0.126-0.0168-0.089-0.0824-0.1578-0.2681-0.0557-0.0791-0.25490.85880.65830.36271.34380.2651.2088-29.3855-72.6977-21.6423
1190.3511-0.2273-0.13990.18860.11730.57010.38290.0412-0.0015-0.09570.1150.07980.06770.04940.79130.78320.41670.07962.06090.41510.7297-18.066-77.8648-29.3334
1200.2787-0.05920.07710.1698-0.00060.02180.0559-0.3293-0.0809-0.0799-0.0125-0.22040.05820.00720.08261.33640.36450.31920.94470.61831.0758-5.2912-65.7765-25.3421
1210.0839-0.06620.01140.05350.00180.00370.55810.1578-0.47510.11450.23150.21060.2661-0.1596-0.00031.0074-0.0827-0.13181.95670.00411.0981-12.1967-74.2575-31.636
1220.01020.0116-0.00980.008-0.00860.0074-0.0184-0.06490.1723-0.2477-0.0495-0.0348-0.03390.20080.00010.99070.34010.29820.92320.11940.679-6.915-90.9906-32.0317
1230.67870.7989-0.0990.9309-0.12320.0113-0.2242-0.2394-0.1903-0.1718-0.52160.077-0.08880.0684-0.4960.5930.13760.19521.2027-0.31960.5615-26.4026-86.0028-36.3151
124-0.0006-0.0002-0.0011-0.00940.0030.0053-0.2223-0.0690.06520.03420.2161-0.4809-0.1736-0.1099-0.00010.9951-0.03730.18081.0113-0.23611.02984.2245-113.282451.338
1250.0852-0.00970.07880.0337-0.00460.05890.1166-0.39150.0754-0.13780.0421-0.07440.1633-0.2696-0.00020.9703-0.0367-0.05260.6212-0.08130.898569.5153-121.893675.9104
1260.41020.2582-0.00170.24980.0880.1226-0.17970.1834-0.3608-0.046-0.04620.0997-0.0779-0.1243-0.36980.50650.1514-0.01420.7-0.36790.605558.3751-123.883677.7392
1270.11290.07640.01150.0308-0.03450.0877-0.21210.6707-0.19910.10830.0872-0.10860.0458-0.39170.00020.7645-0.0052-0.11870.86540.09260.580160.6775-125.088764.9002
1280.68310.08310.28610.37390.23420.50080.32550.1736-0.40420.0407-0.0766-0.09260.31120.16770.36890.52640.01440.20380.2148-0.15510.687374.6405-136.237367.5068
1290.0149-0.011-0.00870.0133-0.00050.0045-0.03070.20230.0833-0.2053-0.2131-0.2253-0.25170.077-00.7305-0.2376-0.19480.9710.09480.795673.7553-136.54264.8654
1300.1806-0.0892-0.20440.04250.0960.21690.66140.29980.3863-0.1154-0.198-0.2321-0.51660.14150.02790.8086-0.1759-0.03431.10270.10010.563366.4441-129.293157.8737
1310.2293-0.3371-0.34630.68240.48450.5323-0.0999-0.42030.01470.23270.327-0.2652-0.21170.0890.18260.49520.0173-0.07681.20380.16180.480457.7375-117.360958.724
1320.04290.10510.01930.32560.06190.0627-0.07410.283-0.5083-0.08740.21970.20780.0744-0.19310.06190.6251-0.2897-0.19550.4410.20071.110338.4175-127.868839.6256
1330.396-0.1226-0.49040.05030.15060.6031-0.2944-0.0267-0.227-0.1937-0.35690.40870.11980.0285-0.09491.1736-0.5982-0.30460.93340.13191.487839.7012-157.861752.3687
1340.0705-0.084-0.05020.10060.05590.02710.3556-0.06970.0444-0.2963-0.07180.21540.50240.39580.1561.0380.1536-0.29250.9982-0.49781.088149.4625-162.985245.5416
1350.05930.0615-0.00580.0947-0.0161-0.0060.0847-0.17930.2019-0.43910.51440.3031-0.0096-0.21480.05030.8526-0.0298-0.06961.1508-0.28920.827451.7559-149.064955.9967
1360.0531-0.03750.01490.12680.10130.0865-0.1065-0.0769-0.1758-0.580.01190.25120.1820.256600.7441-0.2525-0.09321.35750.14630.880955.3176-147.541946.0334
1370.4172-0.06240.1080.212-0.10430.06380.21290.13080.0965-0.22570.29530.0101-0.067-0.0360.01231.117-0.14660.04930.9855-0.08790.471950.7716-155.064434.1981
1380.04760.03520.02640.01510.00870.01620.11630.06420.16380.30270.2069-0.40590.0657-0.05120.00040.93960.19410.04171.16680.1070.771577.6708-154.924822.0569
1390.0680.04660.01290.03450.01080.0005-0.24710.2844-0.15080.2551-0.20210.1160.1510.1013-0.00041.2017-0.1052-0.25281.30180.02391.066391.7899-162.214750.8772
1400.01630.02470.01320.02880.02980.0169-0.0527-0.16130.1087-0.0859-0.23520.27630.3383-0.01440.00010.70790.0024-0.12861.5399-0.12620.996596.621-155.346858.6297
1410.40340.0165-0.20040.6064-0.39630.3380.11380.10330.1499-0.27090.21670.037-0.3359-0.08180.20590.83870.37460.11041.2402-0.1720.572389.0338-147.990651.1541
1420.02520.0945-0.03110.3487-0.10470.03610.0423-0.181-0.2254-0.04710.08920.43740.14690.27540.12151.0530.3179-0.29671.1622-0.23510.724674.8048-158.893953.0248
1430.075-0.0681-0.01440.05340.00250.01310.56270.04620.1528-0.0650.4205-0.03030.24690.0081-0.00031.13970.15950.09881.67090.14540.940979.4292-153.775748.6587
1440.09480.0769-0.06140.0594-0.04830.0403-0.01290.0293-0.1565-0.0329-0.10260.1173-0.0864-0.1910.00171.00240.35160.09320.5676-0.24970.680774.1738-137.064848.2413
1450.64620.6669-0.40160.6786-0.40870.2568-0.1773-0.14610.1146-0.0546-0.6443-0.12890.28480.0217-0.44690.4306-0.1183-0.02571.15210.1740.622693.6136-142.020743.9856
1460.1516-0.07810.01320.0952-0.04570.1551-0.0081-0.0620.18770.36660.11980.123-0.16940.09240.1590.8745-0.1289-0.09420.1195-0.16590.93884.789-12.253813.1557
1470.60120.18180.09660.0817-0.0280.12510.1878-0.1204-0.1875-0.2508-0.307-0.3987-0.0025-0.12380.01480.64530.11710.0590.3135-0.12920.532269.1754-21.800938.7374
1480.0478-0.1162-0.10550.38260.14340.3496-0.241-0.1058-0.04460.0015-0.15120.0401-0.2547-0.0698-0.33250.48130.2184-0.16680.2398-0.16930.641558.3312-23.22840.0809
1490.1835-0.1275-0.02530.0765-0.00920.0120.2658-0.27770.44690.1782-0.046-0.054-0.1410.11710.47340.67060.135-0.02790.7706-0.50280.863257.4024-23.093927.7511
1500.0615-0.056-0.09470.04110.07960.1323-0.00770.3856-0.44970.2056-0.1283-0.6932-0.2423-0.1489-0.00010.52120.0967-0.02570.99530.01520.786967.617-28.856926.8285
1510.0557-0.1296-0.03140.40120.04910.02760.06270.0763-0.05760.46650.3340.49110.47460.3995-0.00460.6489-0.1257-0.13740.88990.07460.565777.1947-38.388132.393
1520.6509-0.5764-0.19460.5020.16570.26640.45850.3020.2634-0.20920.0193-0.0383-0.05190.03040.74610.41630.41650.00470.4507-0.16480.528673.7797-35.920627.2581
1530.0669-0.0391-0.04220.03470.04320.03630.2269-0.0777-0.2758-0.23650.00260.23120.0225-0.1490.00120.50570.07070.12860.25340.07290.481669.0753-25.539324.9779
1540.0139-0.00990.00790.0044-0.00590.0034-0.28210.13750.0399-0.1439-0.224-0.0999-0.0106-0.25030.00010.56860.0248-0.04970.4423-0.11990.630261.9805-34.497611.5075
1550.3015-0.0889-0.34430.10240.0840.4110.27820.0307-0.0657-0.2368-0.02560.0143-0.29010.11410.21270.6829-0.0187-0.25680.7390.17690.134657.9157-16.675921.0354
1560.15370.05660.06250.0548-0.01840.09720.0092-0.0374-0.2216-0.0721-0.08530.05490.116-0.1273-0.26560.86880.1496-0.71731.25750.61040.693338.9986-27.06011.612
157-0.0105-0.04630.03920.5186-0.1990.31520.02840.0786-0.1022-0.5112-0.03650.03240.1807-0.0231-0.29060.6096-0.1858-0.02040.4214-0.16030.680447.065-59.376410.127
1580.195-0.0221-0.01020.36440.06260.15820.27690.01880.1671-0.2372-0.07610.0890.3063-0.01580.2890.6353-0.06450.07180.14510.00680.600152.2485-48.827712.1846
1590.11340.0368-0.15960.0044-0.04570.24360.05630.38590.1110.02050.0513-0.488-0.027-0.3083-0.01761.06180.23850.26230.5671-0.02930.786178.3039-54.7174-15.2039
1600.08690.0575-0.03590.09660.05660.12820.1161-0.0720.07660.12560.11010.01830.02490.1620.18750.6910.46970.22110.7454-0.24790.517691.7636-61.629714.2359
1610.01740.0286-0.00510.0561-0.00060.047-0.1961-0.284-0.01560.2281-0.15860.35340.0294-0.1806-0.15960.47970.3430.01810.515-0.11770.305596.6344-54.768221.123
1620.1918-0.13370.09580.1447-0.10380.0711-0.07050.0148-0.0311-0.06970.2417-0.13910.01990.13030.24640.54720.35420.2590.4598-0.20690.620589.1165-47.420813.6707
163-0.0110.00420.0019-0.00430.02240.1051-0.09560.185-0.3565-0.123-0.37090.46440.4382-0.0524-0.34940.9540.21110.3285-0.0098-0.40870.367173.886-56.704114.3731
1640.088-0.01830.0920.21790.05090.10830.21220.0223-0.23340.16410.06560.20570.104-0.01030.3020.83810.1011-0.1774-0.075-0.03860.426975.6949-59.218816.6618
1650.20640.09480.11910.04570.0640.08130.1430.2806-0.1698-0.2853-0.09350.0476-0.02070.0512-0.08620.70190.41560.36350.32820.01620.664383.1357-51.59978.8996
1660.01750.03760.05050.06820.0950.13170.0395-0.01780.00740.11250.08460.0369-0.0837-0.19130.1950.9335-0.2009-0.13260.79280.63820.611274.2936-36.458910.6428
1670.02350.0804-0.02470.3626-0.25770.37020.23050.08010.2164-0.08210.1093-0.07560.01150.01681.12540.27980.37480.74120.25430.24040.326393.7455-41.53676.5473
精密化 TLSグループ
IDRefine-IDRefine TLS-IDSelection detailsAuth asym-IDAuth seq-ID
1X-RAY DIFFRACTION1chain 'A' and (resid 5 through 28 )A5 - 28
2X-RAY DIFFRACTION2chain 'A' and (resid 29 through 106 )A29 - 106
3X-RAY DIFFRACTION3chain 'A' and (resid 107 through 217 )A107 - 217
4X-RAY DIFFRACTION4chain 'C' and (resid 4 through 28 )C4 - 28
5X-RAY DIFFRACTION5chain 'C' and (resid 29 through 50 )C29 - 50
6X-RAY DIFFRACTION6chain 'C' and (resid 51 through 95 )C51 - 95
7X-RAY DIFFRACTION7chain 'C' and (resid 96 through 173 )C96 - 173
8X-RAY DIFFRACTION8chain 'C' and (resid 174 through 217 )C174 - 217
9X-RAY DIFFRACTION9chain 'E' and (resid 12 through 29 )E12 - 29
10X-RAY DIFFRACTION10chain 'E' and (resid 30 through 50 )E30 - 50
11X-RAY DIFFRACTION11chain 'E' and (resid 51 through 65 )E51 - 65
12X-RAY DIFFRACTION12chain 'E' and (resid 66 through 106 )E66 - 106
13X-RAY DIFFRACTION13chain 'E' and (resid 107 through 140 )E107 - 140
14X-RAY DIFFRACTION14chain 'E' and (resid 141 through 164 )E141 - 164
15X-RAY DIFFRACTION15chain 'E' and (resid 165 through 192 )E165 - 192
16X-RAY DIFFRACTION16chain 'E' and (resid 193 through 217 )E193 - 217
17X-RAY DIFFRACTION17chain 'B' and (resid 5 through 29 )B5 - 29
18X-RAY DIFFRACTION18chain 'B' and (resid 30 through 50 )B30 - 50
19X-RAY DIFFRACTION19chain 'B' and (resid 51 through 65 )B51 - 65
20X-RAY DIFFRACTION20chain 'B' and (resid 66 through 127 )B66 - 127
21X-RAY DIFFRACTION21chain 'B' and (resid 128 through 151 )B128 - 151
22X-RAY DIFFRACTION22chain 'B' and (resid 152 through 174 )B152 - 174
23X-RAY DIFFRACTION23chain 'B' and (resid 175 through 192 )B175 - 192
24X-RAY DIFFRACTION24chain 'B' and (resid 193 through 217 )B193 - 217
25X-RAY DIFFRACTION25chain 'D' and (resid 4 through 28 )D4 - 28
26X-RAY DIFFRACTION26chain 'D' and (resid 29 through 50 )D29 - 50
27X-RAY DIFFRACTION27chain 'D' and (resid 51 through 65 )D51 - 65
28X-RAY DIFFRACTION28chain 'D' and (resid 66 through 118 )D66 - 118
29X-RAY DIFFRACTION29chain 'D' and (resid 119 through 156 )D119 - 156
30X-RAY DIFFRACTION30chain 'D' and (resid 157 through 192 )D157 - 192
31X-RAY DIFFRACTION31chain 'D' and (resid 193 through 217 )D193 - 217
32X-RAY DIFFRACTION32chain 'F' and (resid 12 through 29 )F12 - 29
33X-RAY DIFFRACTION33chain 'F' and (resid 30 through 50 )F30 - 50
34X-RAY DIFFRACTION34chain 'F' and (resid 51 through 65 )F51 - 65
35X-RAY DIFFRACTION35chain 'F' and (resid 66 through 106 )F66 - 106
36X-RAY DIFFRACTION36chain 'F' and (resid 107 through 140 )F107 - 140
37X-RAY DIFFRACTION37chain 'F' and (resid 141 through 164 )F141 - 164
38X-RAY DIFFRACTION38chain 'F' and (resid 165 through 182 )F165 - 182
39X-RAY DIFFRACTION39chain 'F' and (resid 183 through 192 )F183 - 192
40X-RAY DIFFRACTION40chain 'F' and (resid 193 through 217 )F193 - 217
41X-RAY DIFFRACTION41chain 'G' and (resid 5 through 50 )G5 - 50
42X-RAY DIFFRACTION42chain 'G' and (resid 51 through 65 )G51 - 65
43X-RAY DIFFRACTION43chain 'G' and (resid 66 through 127 )G66 - 127
44X-RAY DIFFRACTION44chain 'G' and (resid 128 through 151 )G128 - 151
45X-RAY DIFFRACTION45chain 'G' and (resid 152 through 164 )G152 - 164
46X-RAY DIFFRACTION46chain 'G' and (resid 165 through 192 )G165 - 192
47X-RAY DIFFRACTION47chain 'G' and (resid 193 through 217 )G193 - 217
48X-RAY DIFFRACTION48chain 'H' and (resid 5 through 28 )H5 - 28
49X-RAY DIFFRACTION49chain 'H' and (resid 29 through 65 )H29 - 65
50X-RAY DIFFRACTION50chain 'H' and (resid 66 through 134 )H66 - 134
51X-RAY DIFFRACTION51chain 'H' and (resid 135 through 192 )H135 - 192
52X-RAY DIFFRACTION52chain 'H' and (resid 193 through 217 )H193 - 217
53X-RAY DIFFRACTION53chain 'I' and (resid 8 through 29 )I8 - 29
54X-RAY DIFFRACTION54chain 'I' and (resid 30 through 50 )I30 - 50
55X-RAY DIFFRACTION55chain 'I' and (resid 51 through 65 )I51 - 65
56X-RAY DIFFRACTION56chain 'I' and (resid 66 through 106 )I66 - 106
57X-RAY DIFFRACTION57chain 'I' and (resid 107 through 140 )I107 - 140
58X-RAY DIFFRACTION58chain 'I' and (resid 141 through 164 )I141 - 164
59X-RAY DIFFRACTION59chain 'I' and (resid 165 through 192 )I165 - 192
60X-RAY DIFFRACTION60chain 'I' and (resid 193 through 217 )I193 - 217
61X-RAY DIFFRACTION61chain 'J' and (resid 5 through 50 )J5 - 50
62X-RAY DIFFRACTION62chain 'J' and (resid 51 through 65 )J51 - 65
63X-RAY DIFFRACTION63chain 'J' and (resid 66 through 127 )J66 - 127
64X-RAY DIFFRACTION64chain 'J' and (resid 128 through 151 )J128 - 151
65X-RAY DIFFRACTION65chain 'J' and (resid 152 through 164 )J152 - 164
66X-RAY DIFFRACTION66chain 'J' and (resid 165 through 192 )J165 - 192
67X-RAY DIFFRACTION67chain 'J' and (resid 193 through 217 )J193 - 217
68X-RAY DIFFRACTION68chain 'K' and (resid 4 through 28 )K4 - 28
69X-RAY DIFFRACTION69chain 'K' and (resid 29 through 85 )K29 - 85
70X-RAY DIFFRACTION70chain 'K' and (resid 86 through 156 )K86 - 156
71X-RAY DIFFRACTION71chain 'K' and (resid 157 through 192 )K157 - 192
72X-RAY DIFFRACTION72chain 'K' and (resid 193 through 217 )K193 - 217
73X-RAY DIFFRACTION73chain 'L' and (resid 8 through 29 )L8 - 29
74X-RAY DIFFRACTION74chain 'L' and (resid 30 through 50 )L30 - 50
75X-RAY DIFFRACTION75chain 'L' and (resid 51 through 65 )L51 - 65
76X-RAY DIFFRACTION76chain 'L' and (resid 66 through 127 )L66 - 127
77X-RAY DIFFRACTION77chain 'L' and (resid 128 through 151 )L128 - 151
78X-RAY DIFFRACTION78chain 'L' and (resid 152 through 164 )L152 - 164
79X-RAY DIFFRACTION79chain 'L' and (resid 165 through 182 )L165 - 182
80X-RAY DIFFRACTION80chain 'L' and (resid 183 through 192 )L183 - 192
81X-RAY DIFFRACTION81chain 'L' and (resid 193 through 217 )L193 - 217
82X-RAY DIFFRACTION82chain 'M' and (resid 22 through 35 )M22 - 35
83X-RAY DIFFRACTION83chain 'M' and (resid 36 through 50 )M36 - 50
84X-RAY DIFFRACTION84chain 'M' and (resid 51 through 65 )M51 - 65
85X-RAY DIFFRACTION85chain 'M' and (resid 66 through 106 )M66 - 106
86X-RAY DIFFRACTION86chain 'M' and (resid 107 through 127 )M107 - 127
87X-RAY DIFFRACTION87chain 'M' and (resid 128 through 151 )M128 - 151
88X-RAY DIFFRACTION88chain 'M' and (resid 152 through 164 )M152 - 164
89X-RAY DIFFRACTION89chain 'M' and (resid 165 through 192 )M165 - 192
90X-RAY DIFFRACTION90chain 'M' and (resid 193 through 217 )M193 - 217
91X-RAY DIFFRACTION91chain 'N' and (resid 8 through 28 )N8 - 28
92X-RAY DIFFRACTION92chain 'N' and (resid 29 through 106 )N29 - 106
93X-RAY DIFFRACTION93chain 'N' and (resid 107 through 182 )N107 - 182
94X-RAY DIFFRACTION94chain 'N' and (resid 183 through 217 )N183 - 217
95X-RAY DIFFRACTION95chain 'O' and (resid 6 through 29 )O6 - 29
96X-RAY DIFFRACTION96chain 'O' and (resid 30 through 85 )O30 - 85
97X-RAY DIFFRACTION97chain 'O' and (resid 86 through 127 )O86 - 127
98X-RAY DIFFRACTION98chain 'O' and (resid 128 through 182 )O128 - 182
99X-RAY DIFFRACTION99chain 'O' and (resid 183 through 217 )O183 - 217
100X-RAY DIFFRACTION100chain 'P' and (resid 16 through 35 )P16 - 35
101X-RAY DIFFRACTION101chain 'P' and (resid 36 through 50 )P36 - 50
102X-RAY DIFFRACTION102chain 'P' and (resid 51 through 65 )P51 - 65
103X-RAY DIFFRACTION103chain 'P' and (resid 66 through 85 )P66 - 85
104X-RAY DIFFRACTION104chain 'P' and (resid 86 through 127 )P86 - 127
105X-RAY DIFFRACTION105chain 'P' and (resid 128 through 151 )P128 - 151
106X-RAY DIFFRACTION106chain 'P' and (resid 152 through 164 )P152 - 164
107X-RAY DIFFRACTION107chain 'P' and (resid 165 through 192 )P165 - 192
108X-RAY DIFFRACTION108chain 'P' and (resid 193 through 217 )P193 - 217
109X-RAY DIFFRACTION109chain 'Q' and (resid 6 through 28 )Q6 - 28
110X-RAY DIFFRACTION110chain 'Q' and (resid 29 through 50 )Q29 - 50
111X-RAY DIFFRACTION111chain 'Q' and (resid 51 through 85 )Q51 - 85
112X-RAY DIFFRACTION112chain 'Q' and (resid 86 through 151 )Q86 - 151
113X-RAY DIFFRACTION113chain 'Q' and (resid 152 through 164 )Q152 - 164
114X-RAY DIFFRACTION114chain 'Q' and (resid 165 through 192 )Q165 - 192
115X-RAY DIFFRACTION115chain 'Q' and (resid 193 through 217 )Q193 - 217
116X-RAY DIFFRACTION116chain 'R' and (resid 6 through 29 )R6 - 29
117X-RAY DIFFRACTION117chain 'R' and (resid 30 through 50 )R30 - 50
118X-RAY DIFFRACTION118chain 'R' and (resid 51 through 65 )R51 - 65
119X-RAY DIFFRACTION119chain 'R' and (resid 66 through 127 )R66 - 127
120X-RAY DIFFRACTION120chain 'R' and (resid 128 through 151 )R128 - 151
121X-RAY DIFFRACTION121chain 'R' and (resid 152 through 182 )R152 - 182
122X-RAY DIFFRACTION122chain 'R' and (resid 183 through 192 )R183 - 192
123X-RAY DIFFRACTION123chain 'R' and (resid 193 through 217 )R193 - 217
124X-RAY DIFFRACTION124chain 'S' and (resid 9 through 28 )S9 - 28
125X-RAY DIFFRACTION125chain 'S' and (resid 29 through 50 )S29 - 50
126X-RAY DIFFRACTION126chain 'S' and (resid 51 through 65 )S51 - 65
127X-RAY DIFFRACTION127chain 'S' and (resid 66 through 106 )S66 - 106
128X-RAY DIFFRACTION128chain 'S' and (resid 107 through 151 )S107 - 151
129X-RAY DIFFRACTION129chain 'S' and (resid 152 through 164 )S152 - 164
130X-RAY DIFFRACTION130chain 'S' and (resid 165 through 192 )S165 - 192
131X-RAY DIFFRACTION131chain 'S' and (resid 193 through 217 )S193 - 217
132X-RAY DIFFRACTION132chain 'T' and (resid 5 through 28 )T5 - 28
133X-RAY DIFFRACTION133chain 'T' and (resid 29 through 50 )T29 - 50
134X-RAY DIFFRACTION134chain 'T' and (resid 51 through 85 )T51 - 85
135X-RAY DIFFRACTION135chain 'T' and (resid 86 through 164 )T86 - 164
136X-RAY DIFFRACTION136chain 'T' and (resid 165 through 192 )T165 - 192
137X-RAY DIFFRACTION137chain 'T' and (resid 193 through 217 )T193 - 217
138X-RAY DIFFRACTION138chain 'U' and (resid 5 through 28 )U5 - 28
139X-RAY DIFFRACTION139chain 'U' and (resid 29 through 50 )U29 - 50
140X-RAY DIFFRACTION140chain 'U' and (resid 51 through 65 )U51 - 65
141X-RAY DIFFRACTION141chain 'U' and (resid 66 through 106 )U66 - 106
142X-RAY DIFFRACTION142chain 'U' and (resid 107 through 151 )U107 - 151
143X-RAY DIFFRACTION143chain 'U' and (resid 152 through 182 )U152 - 182
144X-RAY DIFFRACTION144chain 'U' and (resid 183 through 192 )U183 - 192
145X-RAY DIFFRACTION145chain 'U' and (resid 193 through 217 )U193 - 217
146X-RAY DIFFRACTION146chain 'V' and (resid 8 through 29 )V8 - 29
147X-RAY DIFFRACTION147chain 'V' and (resid 30 through 50 )V30 - 50
148X-RAY DIFFRACTION148chain 'V' and (resid 51 through 65 )V51 - 65
149X-RAY DIFFRACTION149chain 'V' and (resid 66 through 85 )V66 - 85
150X-RAY DIFFRACTION150chain 'V' and (resid 86 through 127 )V86 - 127
151X-RAY DIFFRACTION151chain 'V' and (resid 128 through 151 )V128 - 151
152X-RAY DIFFRACTION152chain 'V' and (resid 152 through 164 )V152 - 164
153X-RAY DIFFRACTION153chain 'V' and (resid 165 through 182 )V165 - 182
154X-RAY DIFFRACTION154chain 'V' and (resid 183 through 192 )V183 - 192
155X-RAY DIFFRACTION155chain 'V' and (resid 193 through 217 )V193 - 217
156X-RAY DIFFRACTION156chain 'W' and (resid 5 through 28 )W5 - 28
157X-RAY DIFFRACTION157chain 'W' and (resid 29 through 95 )W29 - 95
158X-RAY DIFFRACTION158chain 'W' and (resid 96 through 217 )W96 - 217
159X-RAY DIFFRACTION159chain 'X' and (resid 5 through 29 )X5 - 29
160X-RAY DIFFRACTION160chain 'X' and (resid 30 through 50 )X30 - 50
161X-RAY DIFFRACTION161chain 'X' and (resid 51 through 65 )X51 - 65
162X-RAY DIFFRACTION162chain 'X' and (resid 66 through 106 )X66 - 106
163X-RAY DIFFRACTION163chain 'X' and (resid 107 through 140 )X107 - 140
164X-RAY DIFFRACTION164chain 'X' and (resid 141 through 164 )X141 - 164
165X-RAY DIFFRACTION165chain 'X' and (resid 165 through 182 )X165 - 182
166X-RAY DIFFRACTION166chain 'X' and (resid 183 through 192 )X183 - 192
167X-RAY DIFFRACTION167chain 'X' and (resid 193 through 217 )X193 - 217

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万見について

-
お知らせ

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2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

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2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

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2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月：コロナウイルスプロテーアーゼ

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2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか？ / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

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2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例：em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

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万見 (Yorodumi)

幾万の構造データを、幾万の視点から

  • 万見(Yorodumi)は、EMDB/PDB/SASBDBなどの構造データを閲覧するためのページです。
  • EM Navigatorの詳細ページの後継、Omokage検索のフロントエンドも兼ねています。

関連情報:EMDB / PDB / SASBDB / 3つのデータバンクの比較 / 万見検索 / 2016年8月31日: 新しいEM Navigatorと万見 / 万見文献 / Jmol/JSmol / 機能・相同性情報 / 新しいEM Navigatorと万見の変更点

他の情報も見る