+Open data
-Basic information
Entry | Database: PDB / ID: 7s8t | ||||||
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Title | M. xanthus ferritin-like protein EncC | ||||||
Components | EncC | ||||||
Keywords | CYTOSOLIC PROTEIN / encapsulin / cargo protein / encapsulated ferritin / ferroxidase | ||||||
Function / homology | Ubiquinone biosynthesis protein COQ7 / Ubiquinone biosynthesis protein Coq7 / ubiquinone biosynthetic process / Ferritin-like superfamily / monooxygenase activity / metal ion binding / plasma membrane / : / Ferritin Function and homology information | ||||||
Biological species | Myxococcus xanthus (bacteria) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.49 Å | ||||||
Authors | Eren, E. | ||||||
Funding support | United States, 1items
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Citation | Journal: Structure / Year: 2022 Title: Structural characterization of the Myxococcus xanthus encapsulin and ferritin-like cargo system gives insight into its iron storage mechanism. Authors: Elif Eren / Bing Wang / Dennis C Winkler / Norman R Watts / Alasdair C Steven / Paul T Wingfield / Abstract: Encapsulins are bacterial organelle-like cages involved in various aspects of metabolism, especially protection from oxidative stress. They can serve as vehicles for a wide range of medical ...Encapsulins are bacterial organelle-like cages involved in various aspects of metabolism, especially protection from oxidative stress. They can serve as vehicles for a wide range of medical applications. Encapsulin shell proteins are structurally similar to HK97 bacteriophage capsid protein and their function depends on the encapsulated cargos. The Myxococcus xanthus encapsulin system comprises EncA and three cargos: EncB, EncC, and EncD. EncB and EncC are similar to bacterial ferritins that can oxidize Fe to less toxic Fe. We analyzed EncA, EncB, and EncC by cryo-EM and X-ray crystallography. Cryo-EM shows that EncA cages can have T = 3 and T = 1 symmetry and that EncA T = 1 has a unique protomer arrangement. Also, we define EncB and EncC binding sites on EncA. X-ray crystallography of EncB and EncC reveals conformational changes at the ferroxidase center and additional metal binding sites, suggesting a mechanism for Fe oxidation and storage within the encapsulin shell. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 7s8t.cif.gz | 174.6 KB | Display | PDBx/mmCIF format |
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PDB format | pdb7s8t.ent.gz | 134.4 KB | Display | PDB format |
PDBx/mmJSON format | 7s8t.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/s8/7s8t ftp://data.pdbj.org/pub/pdb/validation_reports/s8/7s8t | HTTPS FTP |
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-Related structure data
Related structure data | 7s20C 7s21C 7s2tC 7s4qC 7s5cC 7s5kC 5n5eS S: Starting model for refinement C: citing same article (ref.) |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Ens-ID: 1
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