beta-lactam antibiotic catabolic process / beta-lactamase activity / beta-lactamase / response to antibiotic / metal ion binding Similarity search - Function
Beta-lactamase, class-A active site / Beta-lactamase class-A active site. / Beta-lactamase class A, catalytic domain / Beta-lactamase enzyme family / Beta-lactamase, class-A / Beta-lactamase/transpeptidase-like Similarity search - Domain/homology
Type: MARMOSAIC 225 mm CCD / Detector: CCD / Date: Dec 2, 2020
Radiation
Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelength
Wavelength: 1 Å / Relative weight: 1
Reflection
Resolution: 1.95→38.53 Å / Num. obs: 17809 / % possible obs: 98.8 % / Redundancy: 6.6 % / Rpim(I) all: 0.022 / Rrim(I) all: 0.058 / Rsym value: 0.054 / Net I/av σ(I): 7.6 / Net I/σ(I): 23.7
Reflection shell
Diffraction-ID: 1
Resolution (Å)
Redundancy (%)
Rmerge(I) obs
Mean I/σ(I) obs
Num. measured all
Num. unique obs
Rpim(I) all
Rrim(I) all
Rsym value
Net I/σ(I) obs
% possible all
1.95-2.06
6.9
0.07
9.2
17654
2548
0.027
0.076
0.07
17.2
99.3
2.06-2.18
6.7
0.067
9.1
16121
2408
0.027
0.073
0.067
18.9
98.9
2.18-2.33
6.4
0.077
8.4
14469
2246
0.032
0.084
0.077
20.3
98.4
2.33-2.52
6.3
0.057
9.9
13170
2080
0.023
0.062
0.057
21.7
98.3
2.52-2.76
6.1
0.056
10.3
12145
1995
0.023
0.061
0.056
22.9
98.7
2.76-3.08
6
0.059
9.6
10563
1753
0.025
0.064
0.059
25.1
98.7
3.08-3.56
6.2
0.054
10.7
9855
1600
0.022
0.058
0.054
29
98.4
3.56-4.36
6.6
0.048
10.7
8901
1356
0.02
0.052
0.048
32.2
98.5
4.36-6.17
7.7
0.037
13.7
8694
1130
0.014
0.04
0.037
33.9
99.6
6.17-38.527
8.3
0.057
6.3
5751
693
0.023
0.062
0.057
34.4
99.6
-
Processing
Software
Name
Version
Classification
PHENIX
1.17.1_3660
refinement
SCALA
3.3.22
datascaling
PDB_EXTRACT
3.27
dataextraction
iMOSFLM
datareduction
PHENIX
phasing
Refinement
Method to determine structure: SAD / Resolution: 1.95→38.527 Å / SU ML: 0.21 / Cross valid method: THROUGHOUT / σ(F): 1.48 / Phase error: 24.33 / Stereochemistry target values: ML
Rfactor
Num. reflection
% reflection
Rfree
0.2592
1778
10.03 %
Rwork
0.1889
15956
-
obs
0.196
17734
98.41 %
Solvent computation
Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL
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