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- PDB-7lo0: Structure of human ASF1a in complex with a TLK2 peptide -

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基本情報

登録情報
データベース: PDB / ID: 7lo0
タイトルStructure of human ASF1a in complex with a TLK2 peptide
要素
  • Histone chaperone ASF1A
  • Serine/threonine-protein kinase tousled-like 2
キーワードCELL CYCLE / histone chaperone / kinase / docking / nucleosome assembly
機能・相同性
機能・相同性情報


histone chaperone activity / regulation of chromatin organization / nucleus localization / muscle cell differentiation / DNA replication-dependent chromatin assembly / DNA repair-dependent chromatin remodeling / intermediate filament / Formation of Senescence-Associated Heterochromatin Foci (SAHF) / replication fork processing / negative regulation of proteasomal ubiquitin-dependent protein catabolic process ...histone chaperone activity / regulation of chromatin organization / nucleus localization / muscle cell differentiation / DNA replication-dependent chromatin assembly / DNA repair-dependent chromatin remodeling / intermediate filament / Formation of Senescence-Associated Heterochromatin Foci (SAHF) / replication fork processing / negative regulation of proteasomal ubiquitin-dependent protein catabolic process / negative regulation of autophagy / chromosome segregation / cellular response to gamma radiation / osteoblast differentiation / nucleosome assembly / chromatin organization / site of double-strand break / histone binding / peptidyl-serine phosphorylation / non-specific serine/threonine protein kinase / intracellular signal transduction / protein phosphorylation / protein serine kinase activity / DNA repair / protein serine/threonine kinase activity / DNA damage response / chromatin binding / chromatin / perinuclear region of cytoplasm / protein-containing complex / nucleoplasm / ATP binding / identical protein binding / nucleus
類似検索 - 分子機能
Histone chaperone ASF1-like / Histone chaperone ASF1-like superfamily / ASF1 like histone chaperone / Serine/threonine-protein kinase, active site / Serine/Threonine protein kinases active-site signature. / Protein kinase domain / Serine/Threonine protein kinases, catalytic domain / Protein kinase, ATP binding site / Protein kinases ATP-binding region signature. / Protein kinase domain profile. ...Histone chaperone ASF1-like / Histone chaperone ASF1-like superfamily / ASF1 like histone chaperone / Serine/threonine-protein kinase, active site / Serine/Threonine protein kinases active-site signature. / Protein kinase domain / Serine/Threonine protein kinases, catalytic domain / Protein kinase, ATP binding site / Protein kinases ATP-binding region signature. / Protein kinase domain profile. / Protein kinase domain / Protein kinase-like domain superfamily
類似検索 - ドメイン・相同性
Serine/threonine-protein kinase tousled-like 2 / Histone chaperone ASF1A
類似検索 - 構成要素
生物種Homo sapiens (ヒト)
手法X線回折 / シンクロトロン / 分子置換 / 解像度: 2.71 Å
データ登録者Simon, B. / Calderwood, D. / Turk, B.E. / Boggon, T.J.
資金援助 米国, 3件
組織認可番号
National Institutes of Health/National Center for Advancing Translational Sciences (NIH/NCATS)1R03TR002912-01 米国
American Heart Association18POST33960340 米国
National Institutes of Health/National Cancer Institute (NIH/NCI)5P50 CA196530 米国
引用ジャーナル: Nat Commun / : 2022
タイトル: Tousled-like kinase 2 targets ASF1 histone chaperones through client mimicry.
著者: Simon, B. / Lou, H.J. / Huet-Calderwood, C. / Shi, G. / Boggon, T.J. / Turk, B.E. / Calderwood, D.A.
履歴
登録2021年2月8日登録サイト: RCSB / 処理サイト: RCSB
改定 1.02022年2月16日Provider: repository / タイプ: Initial release
改定 1.12023年10月18日Group: Data collection / Refinement description
カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / pdbx_initial_refinement_model / struct_ncs_dom_lim
Item: _struct_ncs_dom_lim.beg_auth_comp_id / _struct_ncs_dom_lim.beg_label_asym_id ..._struct_ncs_dom_lim.beg_auth_comp_id / _struct_ncs_dom_lim.beg_label_asym_id / _struct_ncs_dom_lim.beg_label_comp_id / _struct_ncs_dom_lim.beg_label_seq_id / _struct_ncs_dom_lim.end_auth_comp_id / _struct_ncs_dom_lim.end_label_asym_id / _struct_ncs_dom_lim.end_label_comp_id / _struct_ncs_dom_lim.end_label_seq_id

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構造の表示

構造ビューア分子:
MolmilJmol/JSmol

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集合体

登録構造単位
A: Histone chaperone ASF1A
B: Histone chaperone ASF1A
C: Histone chaperone ASF1A
D: Histone chaperone ASF1A
E: Histone chaperone ASF1A
F: Histone chaperone ASF1A
G: Histone chaperone ASF1A
H: Histone chaperone ASF1A
I: Serine/threonine-protein kinase tousled-like 2
J: Serine/threonine-protein kinase tousled-like 2
K: Serine/threonine-protein kinase tousled-like 2
L: Serine/threonine-protein kinase tousled-like 2
M: Serine/threonine-protein kinase tousled-like 2
N: Serine/threonine-protein kinase tousled-like 2
O: Serine/threonine-protein kinase tousled-like 2
P: Serine/threonine-protein kinase tousled-like 2
Q: Serine/threonine-protein kinase tousled-like 2
R: Serine/threonine-protein kinase tousled-like 2
T: Serine/threonine-protein kinase tousled-like 2
U: Serine/threonine-protein kinase tousled-like 2
V: Serine/threonine-protein kinase tousled-like 2
W: Serine/threonine-protein kinase tousled-like 2
X: Serine/threonine-protein kinase tousled-like 2
Y: Serine/threonine-protein kinase tousled-like 2


分子量 (理論値)分子数
合計 (水以外)182,63624
ポリマ-182,63624
非ポリマー00
2,990166
1
A: Histone chaperone ASF1A
I: Serine/threonine-protein kinase tousled-like 2
Q: Serine/threonine-protein kinase tousled-like 2


分子量 (理論値)分子数
合計 (水以外)22,8293
ポリマ-22,8293
非ポリマー00
362
タイプ名称対称操作
identity operation1_555x,y,z1
2
B: Histone chaperone ASF1A
J: Serine/threonine-protein kinase tousled-like 2
R: Serine/threonine-protein kinase tousled-like 2


分子量 (理論値)分子数
合計 (水以外)22,8293
ポリマ-22,8293
非ポリマー00
362
タイプ名称対称操作
identity operation1_555x,y,z1
3
C: Histone chaperone ASF1A
K: Serine/threonine-protein kinase tousled-like 2
T: Serine/threonine-protein kinase tousled-like 2


分子量 (理論値)分子数
合計 (水以外)22,8293
ポリマ-22,8293
非ポリマー00
543
タイプ名称対称操作
identity operation1_555x,y,z1
4
D: Histone chaperone ASF1A
L: Serine/threonine-protein kinase tousled-like 2
U: Serine/threonine-protein kinase tousled-like 2


分子量 (理論値)分子数
合計 (水以外)22,8293
ポリマ-22,8293
非ポリマー00
543
タイプ名称対称操作
identity operation1_555x,y,z1
5
E: Histone chaperone ASF1A
M: Serine/threonine-protein kinase tousled-like 2
V: Serine/threonine-protein kinase tousled-like 2


分子量 (理論値)分子数
合計 (水以外)22,8293
ポリマ-22,8293
非ポリマー00
362
タイプ名称対称操作
identity operation1_555x,y,z1
6
F: Histone chaperone ASF1A
N: Serine/threonine-protein kinase tousled-like 2
W: Serine/threonine-protein kinase tousled-like 2


分子量 (理論値)分子数
合計 (水以外)22,8293
ポリマ-22,8293
非ポリマー00
362
タイプ名称対称操作
identity operation1_555x,y,z1
7
G: Histone chaperone ASF1A
O: Serine/threonine-protein kinase tousled-like 2
X: Serine/threonine-protein kinase tousled-like 2


分子量 (理論値)分子数
合計 (水以外)22,8293
ポリマ-22,8293
非ポリマー00
181
タイプ名称対称操作
identity operation1_555x,y,z1
8
H: Histone chaperone ASF1A
P: Serine/threonine-protein kinase tousled-like 2
Y: Serine/threonine-protein kinase tousled-like 2


分子量 (理論値)分子数
合計 (水以外)22,8293
ポリマ-22,8293
非ポリマー00
362
タイプ名称対称操作
identity operation1_555x,y,z1
単位格子
Length a, b, c (Å)88.023, 136.681, 101.316
Angle α, β, γ (deg.)90.000, 103.220, 90.000
Int Tables number4
Space group name H-MP1211
非結晶学的対称性 (NCS)NCSドメイン:
IDEns-ID詳細
11(chain A and resid 3 through 153)
21(chain B and resid 3 through 153)
31(chain C and resid 3 through 153)
41chain D
51(chain E and resid 3 through 153)
61(chain F and resid 3 through 153)
71(chain G and resid 3 through 153)
81(chain H and resid 3 through 153)
12(chain I and resid 9 through 22)
22(chain J and resid 9 through 22)
32(chain K and resid 9 through 22)
42(chain L and resid 9 through 22)
52(chain M and resid 9 through 22)
62chain O
72chain P
13chain Q
23(chain R and resid 11 through 17)
33chain T
43chain U
53chain V
63chain W
73chain X
83chain Y

NCSドメイン領域:

Component-ID: 1

Dom-IDEns-IDBeg auth comp-IDBeg label comp-IDEnd auth comp-IDEnd label comp-IDSelection detailsAuth asym-IDLabel asym-IDAuth seq-IDLabel seq-ID
11LYSLYSTRPTRP(chain A and resid 3 through 153)AA3 - 1535 - 155
21LYSLYSTRPTRP(chain B and resid 3 through 153)BB3 - 1535 - 155
31LYSLYSTRPTRP(chain C and resid 3 through 153)CC3 - 1535 - 155
41LYSLYSTRPTRPchain DDD3 - 1535 - 155
51LYSLYSTRPTRP(chain E and resid 3 through 153)EE3 - 1535 - 155
61LYSLYSTRPTRP(chain F and resid 3 through 153)FF3 - 1535 - 155
71LYSLYSTRPTRP(chain G and resid 3 through 153)GG3 - 1535 - 155
81LYSLYSTRPTRP(chain H and resid 3 through 153)HH3 - 1535 - 155
12ASPASPGLYGLY(chain I and resid 9 through 22)II9 - 227 - 20
22ASPASPGLYGLY(chain J and resid 9 through 22)JJ9 - 227 - 20
32ASPASPGLYGLY(chain K and resid 9 through 22)KK9 - 227 - 20
42ASPASPGLYGLY(chain L and resid 9 through 22)LL9 - 227 - 20
52ASPASPGLYGLY(chain M and resid 9 through 22)MM9 - 227 - 20
62ASPASPGLYGLYchain OOO9 - 227 - 20
72ASPASPGLYGLYchain PPP9 - 227 - 20
13ARGARGGLUGLUchain QQQ11 - 179 - 15
23ARGARGGLUGLU(chain R and resid 11 through 17)RR11 - 179 - 15
33ARGARGGLUGLUchain TTS11 - 179 - 15
43ARGARGGLUGLUchain UUT11 - 179 - 15
53ARGARGGLUGLUchain VVU11 - 179 - 15
63ARGARGGLUGLUchain WWV11 - 179 - 15
73ARGARGGLUGLUchain XXW11 - 179 - 15
83ARGARGGLUGLUchain YYX11 - 179 - 15

NCSアンサンブル:
ID
1
2
3

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要素

#1: タンパク質
Histone chaperone ASF1A / Anti-silencing function protein 1 homolog A / hAsf1 / hAsf1a / CCG1-interacting factor A / CIA / hCIA


分子量: 17829.896 Da / 分子数: 8 / 断片: Residues 1-155 / 由来タイプ: 組換発現 / 由来: (組換発現) Homo sapiens (ヒト) / 遺伝子: ASF1A, CGI-98, HSPC146 / 発現宿主: Escherichia coli (大腸菌) / 株 (発現宿主): Rosetta 2 / 参照: UniProt: Q9Y294
#2: タンパク質・ペプチド
Serine/threonine-protein kinase tousled-like 2 / HsHPK / PKU-alpha / Tousled-like kinase 2


分子量: 2499.777 Da / 分子数: 16 / 断片: Residues 3-23 / 由来タイプ: 組換発現 / 由来: (組換発現) Homo sapiens (ヒト) / 遺伝子: TLK2 / 発現宿主: Escherichia coli (大腸菌) / 株 (発現宿主): Rosetta 2
参照: UniProt: Q86UE8, non-specific serine/threonine protein kinase
#3: 水 ChemComp-HOH / water


分子量: 18.015 Da / 分子数: 166 / 由来タイプ: 天然 / : H2O

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実験情報

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実験

実験手法: X線回折 / 使用した結晶の数: 1

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試料調製

結晶マシュー密度: 3.25 Å3/Da / 溶媒含有率: 62.2 %
結晶化温度: 293 K / 手法: 蒸気拡散法, ハンギングドロップ法 / pH: 5.6
詳細: 18% PEG3350, 0.2 M of trisodium citrate, pH 5.6 and 2% Octyl-D-glucose

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データ収集

回折平均測定温度: 100 K / Serial crystal experiment: N
放射光源由来: シンクロトロン / サイト: APS / ビームライン: 24-ID-C / 波長: 0.9792 Å
検出器タイプ: DECTRIS PILATUS 6M / 検出器: PIXEL / 日付: 2019年8月17日
放射プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray
放射波長波長: 0.9792 Å / 相対比: 1
反射解像度: 2.71→98.63 Å / Num. obs: 62051 / % possible obs: 98 % / 冗長度: 3.2 % / Biso Wilson estimate: 53.44 Å2 / CC1/2: 0.998 / Rmerge(I) obs: 0.057 / Rpim(I) all: 0.037 / Rrim(I) all: 0.068 / Net I/σ(I): 10.9 / Num. measured all: 199527
反射 シェル

Diffraction-ID: 1

解像度 (Å)冗長度 (%)Rmerge(I) obsNum. measured allNum. unique obsCC1/2Rpim(I) allRrim(I) allNet I/σ(I) obs% possible all
2.71-2.7830.4391340244410.8630.2920.53296.1
12.12-98.633.40.02424607210.9980.0150.02827.296.3

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位相決定

位相決定手法: 分子置換
Phasing MR
最高解像度最低解像度
Rotation2.45 Å98.63 Å
Translation2.45 Å98.63 Å

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解析

ソフトウェア
名称バージョン分類
PHENIX1.19精密化
XDSデータ削減
Aimless0.7.4データスケーリング
PHASER2.8.2位相決定
PDB_EXTRACT3.25データ抽出
精密化構造決定の手法: 分子置換
開始モデル: 2I32
解像度: 2.71→98.63 Å / SU ML: 0.4 / 交差検証法: THROUGHOUT / σ(F): 1.35 / 位相誤差: 23.27 / 立体化学のターゲット値: ML
Rfactor反射数%反射Selection details
Rfree0.2256 6075 5.13 %0
Rwork0.213 112347 --
obs0.2137 62010 94.84 %-
溶媒の処理減衰半径: 0.9 Å / VDWプローブ半径: 1.11 Å / 溶媒モデル: FLAT BULK SOLVENT MODEL
原子変位パラメータBiso max: 176.24 Å2 / Biso mean: 63.0621 Å2 / Biso min: 22.61 Å2
精密化ステップサイクル: final / 解像度: 2.71→98.63 Å
タンパク質核酸リガンド溶媒全体
原子数11382 0 0 166 11548
Biso mean---47.38 -
残基数----1401
拘束条件
Refine-IDタイプDev ideal
X-RAY DIFFRACTIONf_bond_d0.00211647
X-RAY DIFFRACTIONf_angle_d0.51215864
X-RAY DIFFRACTIONf_dihedral_angle_d13.8424338
X-RAY DIFFRACTIONf_chiral_restr0.0471746
X-RAY DIFFRACTIONf_plane_restr0.0052118
Refine LS restraints NCS
Ens-IDDom-IDAuth asym-IDRefine-IDRmsタイプ
11A5981X-RAY DIFFRACTION12.571TORSIONAL
12B5981X-RAY DIFFRACTION12.571TORSIONAL
13C5981X-RAY DIFFRACTION12.571TORSIONAL
14D5981X-RAY DIFFRACTION12.571TORSIONAL
15E5981X-RAY DIFFRACTION12.571TORSIONAL
16F5981X-RAY DIFFRACTION12.571TORSIONAL
17G5981X-RAY DIFFRACTION12.571TORSIONAL
18H5981X-RAY DIFFRACTION12.571TORSIONAL
21I523X-RAY DIFFRACTION12.571TORSIONAL
22J523X-RAY DIFFRACTION12.571TORSIONAL
23K523X-RAY DIFFRACTION12.571TORSIONAL
24L523X-RAY DIFFRACTION12.571TORSIONAL
25M523X-RAY DIFFRACTION12.571TORSIONAL
26O523X-RAY DIFFRACTION12.571TORSIONAL
27P523X-RAY DIFFRACTION12.571TORSIONAL
31Q327X-RAY DIFFRACTION12.571TORSIONAL
32R327X-RAY DIFFRACTION12.571TORSIONAL
33T327X-RAY DIFFRACTION12.571TORSIONAL
34U327X-RAY DIFFRACTION12.571TORSIONAL
35V327X-RAY DIFFRACTION12.571TORSIONAL
36W327X-RAY DIFFRACTION12.571TORSIONAL
37X327X-RAY DIFFRACTION12.571TORSIONAL
38Y327X-RAY DIFFRACTION12.571TORSIONAL
LS精密化 シェル

Refine-ID: X-RAY DIFFRACTION / Rfactor Rfree error: 0 / Total num. of bins used: 30

解像度 (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkNum. reflection all% reflection obs (%)
2.71-2.740.47282140.42463453366786
2.74-2.770.42521880.38833600378894
2.77-2.810.39992370.3583817405496
2.81-2.840.31072100.32953803401396
2.84-2.880.28562020.28883781398397
2.88-2.920.26852130.26933796400997
2.92-2.960.26691970.25033861405897
2.96-3.010.24012020.24293813401597
3.01-3.050.27641780.24883836401497
3.05-3.10.25472150.24293819403496
3.1-3.160.27182140.2583792400696
3.16-3.210.28921990.27513745394496
3.21-3.270.32642360.29453824406096
3.27-3.340.28181940.30433750394496
3.34-3.410.29921980.263734393295
3.41-3.490.24631870.233765395293
3.49-3.580.22511660.21023462362888
3.58-3.680.24691870.19663756394394
3.68-3.790.19932010.19833851405297
3.79-3.910.18432120.19473773398596
3.91-4.050.2012120.18893878409097
4.05-4.210.19881760.19033855403197
4.21-4.40.18242040.15923794399896
4.4-4.630.1661840.14473805398996
4.63-4.920.1542270.15073662388994
4.92-5.30.16072140.15773487370189
5.3-5.840.20772210.17513750397196
5.84-6.680.2081760.20083772394895
6.68-8.420.23142170.21283724394194
8.42-98.630.21940.19953589378391
精密化 TLS

手法: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
11.5623-0.2945-1.322.63630.89882.24710.3772-0.186-0.3421-0.3334-0.0333-0.38720.4475-0.7020.07640.5219-0.0270.14790.4550.07070.495344.764256.859454.4948
22.3878-1.5037-2.81744.2111.6953.519-0.5826-1.076-0.0049-0.4295-0.57470.03180.1480.03150.40070.4188-0.023-0.24960.4439-0.06410.359563.565570.35660.7494
33.76541.90210.41774.48280.62333.36080.043-0.2064-1.08330.00310.037-0.33120.5164-0.2918-0.13710.4246-0.067-0.02760.39930.01850.584550.601252.617252.5708
42.40550.2154-0.44956.9231-1.34652.3108-0.08390.10850.0004-0.66360.44220.1520.1083-0.1169-0.25160.33870.0157-0.04960.3287-0.03940.352758.488668.036245.1429
56.46072.8617-2.98967.35110.52791.8783-0.1786-1.2883-1.27141.06220.04070.70480.9483-0.2560.02380.5836-0.0372-0.10930.37890.16420.61253.899651.776455.4691
63.24860.34310.46540.30310.38990.8122-0.08940.2818-0.06920.32660.09630.06690.106-0.02880.01070.30610.02040.02920.2902-0.00710.309658.399569.73747.4135
72.56093.45681.05794.59411.53920.7487-0.1045-0.04790.4051-0.0395-0.20690.4037-0.10930.00520.03840.3555-0.00710.03810.36720.01830.429653.030971.529352.9125
83.51842.4166-1.46595.1861-2.63795.17130.469-0.61890.61461.0039-0.1553-0.1313-0.31180.3854-0.34580.5358-0.07810.03320.3699-0.06520.605267.677388.059459.6952
97.55042.4038-1.64453.0251-2.48352.34580.7387-0.2059-0.17640.6472-0.5058-0.313-0.2551-0.1602-0.13760.42920.02880.00380.35750.0050.319363.933976.906859.2448
101.57221.85421.9342.79561.63063.70880.2291-0.15480.14390.3673-0.30970.55330.4302-0.34510.25870.43820.01040.03620.4704-0.04560.42443.964962.401148.2635
118.3163-3.18462.91032.4387-0.74432.7015-0.3232-0.56560.477-0.09350.0630.0368-0.3092-0.57750.37960.537-0.09120.04050.4108-0.02050.485929.3603130.211275.22
124.6003-0.1136-0.58352.59410.64583.93230.03410.61820.83040.9937-0.5053-0.11260.06150.3055-0.15220.28930.0168-0.09670.4956-0.0010.383540.787112.48181.6765
134.1307-1.88860.19498.47170.82823.4539-0.1802-1.10111.20040.14630.3977-0.8136-0.5787-0.31670.13320.41110.09310.0240.3986-0.03750.42329.9611126.740979.3589
141.8042-2.9644-0.52034.97910.85920.5536-0.22640.3329-0.8065-0.0629-0.24632.0012-0.6356-1.15190.23540.60550.2408-0.11440.6528-0.17290.703414.375131.741177.2446
152.7509-1.9236-1.40764.73291.65282.5699-0.1309-0.1366-0.4957-0.3864-0.07040.5521-0.1235-0.250.09320.2933-0.0148-0.04790.39750.04030.318927.3214111.852971.679
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193.29631.02551.09395.72020.54822.516-0.12250.22390.75290.06620.034-1.0245-0.30950.25340.02840.36590.04230.05410.3943-0.05180.693551.4913100.936974.0119
206.5211-4.92550.28947.5706-2.48483.4334-0.6344-0.32170.8520.91690.9165-2.07120.03250.03310.23420.32170.0252-0.07480.3849-0.02760.324743.8262109.022677.6476
211.58390.33721.73862.1896-0.33883.4481-0.06370.30860.5162-0.4071-0.0634-0.1914-0.2171-0.54380.120.3730.02990.04350.43180.00220.400727.2016127.165865.9951
221.9124-0.80151.06492.7382-1.72618.1623-0.00330.6903-0.2725-0.383-0.42270.14440.8820.4151-0.31780.46920.07640.05670.432-0.09680.622985.3839116.247525.5338
233.65781.5594-1.1055.839-0.57423.3482-0.0774-0.73260.5459-0.76260.8311-0.39831.01980.49370.02520.4322-0.0186-0.07980.39180.10340.35882.1987119.270347.8036
242.3721-0.7375-1.75731.8398-0.08744.4334-0.1540.5137-0.2124-0.2059-0.0248-0.0083-0.00480.0490.05160.3503-0.0199-0.11110.4194-0.06020.402180.7809123.07829.237
253.67110.8864-3.52333.2803-0.25993.3876-0.34010.9636-0.6795-0.12650.27690.1467-0.2128-0.4984-0.01420.3936-0.011-0.16470.39870.00960.391372.9438127.664935.6796
261.9761-0.41-2.70022.7344-0.0753.0559-0.0063-0.20210.075-0.517-0.0569-0.7906-0.0351.58160.08610.33960.02150.04680.55760.08230.366989.9415124.141427.9797
271.5965-0.20290.73311.38521.8493.2453-0.0350.1299-0.1523-0.0036-0.0980.2909-0.1668-0.1230.15510.22570.0198-0.02940.24130.00410.359572.2512122.782838.8654
281.36950.0155-1.60841.9169-1.30244.2385-0.06560.089-0.2619-0.15-0.00430.11330.0756-0.1015-0.12520.3430.0147-0.06060.3194-0.0240.463574.713116.271536.1358
296.0321-1.4279-4.47510.60070.16668.4828-0.7309-1.1363-1.42520.55940.17770.71741.28031.1644-0.04770.73150.09340.09610.51280.15240.831472.9667109.933460.6085
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312.1507-0.5391-1.31393.1173.56238.69410.018-0.3123-0.3148-0.16680.10980.4228-0.16960.543-0.28840.25620.06410.06160.3790.04690.544676.8298117.078951.0131
321.1321-1.06711.0463.1672-3.36425.6175-0.26880.2547-0.2559-0.9696-0.4117-0.01061.0525-0.5430.14980.4272-0.0065-0.08380.434-0.1560.62776.6647115.895223.9894
336.0795-0.43641.42012.7085-1.56882.0711-1.0169-0.11581.3960.44970.0797-2.0449-0.0717-0.247-0.2213-0.93230.15260.78550.47160.10681.288899.965998.432235.1199
347.40051.7548-2.46426.3968-3.00756.2142-0.863-0.2402-0.2719-1.73550.5335-1.39870.66190.7888-0.29480.6530.06230.05130.4292-0.12420.461883.262484.845930.228
355.73580.2491-1.00130.42750.82691.13760.0228-0.0899-0.18-0.00040.3551-1.4343-0.16710.4013-0.02080.60810.00520.12920.4886-0.03261.1708103.69493.321938.3782
364.23150.4547-0.63363.2320.48262.16220.5831-0.36970.64050.12990.0771-0.63340.07740.3514-0.23110.43580.03150.03860.229-0.00810.667487.389891.60444.7139
375.48551.149-0.79573.6897-0.00031.51050.0292-0.13480.07470.14720.1144-0.6680.28260.2945-0.29460.42810.0363-0.0880.2708-0.02980.571788.337287.54746.7634
386.09732.7980.87222.33281.03440.4917-0.05290.3844-0.4275-0.29430.3926-1.1694-0.02590.5414-0.41350.50840.01410.18260.6259-0.18480.9656103.733290.080435.702
390.9673-0.3371-0.49262.3992-0.1531.5767-0.03430.08550.1420.16530.1948-0.76380.03790.1776-0.21690.35430.0419-0.0250.27580.00890.570984.212389.861143.0207
403.74711.8070.88683.88240.89681.3385-0.22270.15070.0898-0.14160.2459-0.6039-0.3044-0.0002-0.19730.46440.03950.08460.2768-0.00090.510185.632695.704938.9034
417.25151.2528-4.53615.7303-2.79434.4788-0.04440.91970.2179-1.12130.08690.32050.0363-0.6447-0.34660.6470.003-0.0180.47490.07140.491965.172885.31530.8832
422.5389-0.0483-0.22085.5375-0.21452.1404-0.06010.65980.5788-0.83120.42110.44920.03590.033-0.360.46460.04280.09110.34590.05510.462479.651290.892731.3582
434.26651.1680.53442.24531.67821.11490.7575-0.3790.86240.778-0.1603-1.07950.9177-0.06230.05560.5268-0.05780.14430.4212-0.15161.059797.788103.757945.7232
445.9079-3.15051.10165.5551-1.94845.5638-0.5181-1.5229-0.27240.31390.26781.33770.7071-0.22110.13480.80890.03550.28520.450.04810.440140.234761.036778.1954
451.6150.757-0.99886.0849-2.69723.3260.39880.2681-0.34151.5251-0.40381.06990.22510.1805-0.11190.2492-0.0713-0.03330.5668-0.00520.476926.978678.37371.7614
461.9663-0.2820.24545.1057-0.76322.6754-0.1768-0.569-0.39430.37570.0266-0.23930.43860.04680.22350.48030.05890.04540.4530.03140.418640.438772.490181.8465
473.1591-1.3994-0.0553.2210.73342.8311-0.47660.2961-1.07960.1352-0.0114-0.30930.60970.11050.43470.64960.03590.06530.50630.20340.795734.053563.034285.5106
483.05770.2799-0.91112.66970.74230.3722-0.0638-0.1257-0.3067-0.00040.19710.17710.15850.0697-0.1240.34420.0216-0.05030.3192-0.01880.264839.895980.764576.0232
492.0987-0.0172-0.3163.52630.25191.57920.1540.0026-0.2135-0.3696-0.1059-0.19630.69120.12760.00170.3282-0.0051-0.00310.3114-0.04880.271540.655874.83771.7581
508.9114-4.43622.26324.5216-3.28852.7105-1.51220.9842-1.1639-2.53920.43742.1599-0.3522-1.4091-0.1130.7688-0.0466-0.22170.8044-0.02370.416225.749688.748156.5178
510.82210.16080.07792.5062-1.63560.9429-0.00120.3098-0.1698-0.6505-0.0650.09940.0469-0.3972-0.03210.3868-0.0711-0.00750.3709-0.03010.296531.480984.022865.4363
524.7752-1.68694.78472.3231-2.53865.7187-0.3989-0.83330.06930.19920.3315-1.0940.61050.3151-0.04950.6270.1686-0.05660.5721-0.0040.675850.721564.93878.764
533.40111.3582-2.39032.8768-0.49855.2230.8013-1.65941.06960.52-1.3799-1.0453-1.2889-0.43650.4560.2547-0.07780.68230.5935-0.54260.901548.8605143.089380.2985
541.21881.5528-1.2141.6531-1.34951.02360.44640.06461.15750.20910.249-0.20780.1102-0.5641-0.05810.48710.0302-0.00180.33880.09370.621352.3841141.849457.785
552.9323-0.07461.02972.23891.3152.37580.0298-0.5520.37540.6317-0.38060.2017-0.3485-0.39860.25960.5909-0.06720.18070.4198-0.05630.623756.5815140.716176.3348
561.78870.61760.18024.56682.46563.8937-0.2475-0.49190.15791.20180.11060.51470.00660.84460.24650.4223-0.05340.06910.39350.01460.482863.1993134.640869.5728
570.9451-0.5424-0.81370.45630.90118.1110.4366-0.35780.97390.8763-0.69820.6374-1.6303-0.27060.19891.0671-0.10610.26320.6221-0.24380.884455.1986149.858577.8321
581.629-0.0852-0.03392.5026-0.46071.62950.0003-0.2285-0.0460.28340.02860.1474-0.1892-0.0233-0.13090.313-0.03090.12970.36920.01520.535758.6713132.884467.17
591.5960.0265-0.39981.5469-0.35185.10110.09240.05120.22410.0969-0.23470.328-0.48880.33230.11770.3058-0.00030.09230.35930.05880.561451.013133.079467.5529
603.57640.0311-3.22614.42150.39134.3718-0.06780.5625-0.0478-0.4074-0.13820.2611-0.2443-0.50370.15860.31140.0102-0.0040.40720.01670.644749.7159132.384251.5592
613.71081.68883.11873.61193.56746.49-0.286-0.72180.69981.1081-0.5730.57970.09680.25210.66540.7537-0.15650.21460.6967-0.02710.630952.7597133.383284.8454
625.9459-0.6438-0.26161.97290.13051.4803-0.2044-0.79650.78-0.47680.37390.05790.0834-0.68540.40680.5625-0.06580.00490.45260.22660.521727.676359.7655-4.6833
634.7532-0.5657-1.87170.4701-0.70452.61680.10670.70520.73870.1672-0.3925-0.25560.22650.336-0.25770.49590.0108-0.02950.46780.02690.433744.383446.29375.8219
642.8956-1.2976-0.46114.23441.21031.9033-0.0332-0.58330.1772-0.40090.12040.6214-0.3064-0.45170.13710.4836-0.1281-0.02320.46280.120.347624.10257.32121.1391
654.7909-3.7702-2.04764.33651.73472.1945-0.3213-0.0796-0.6515-0.19770.21040.16530.44750.02420.10020.5112-0.0642-0.07570.42750.10080.339731.954942.3523-4.1778
664.9479-3.75-1.86085.47251.25724.25530.5182-0.0358-0.3241-1.0323-0.23850.225-0.3553-0.43060.17380.4344-0.0703-0.06830.36870.05940.406430.385638.867-1.6378
678.0933-1.2621-0.23062.6439-2.68932.40930.7603-0.55682.08510.8957-0.04240.3527-1.09140.1240.04440.52510.00810.04760.48620.01370.398625.324757.24055.2048
68-0.1236-0.1441-0.2131.8779-0.7431.9845-0.02960.1167-0.0646-0.23220.0275-0.05750.4833-0.17160.03260.5018-0.03850.03960.4486-0.00390.366835.237540.7328-2.7866
695.0662-2.56981.64542.1222-1.21970.8336-0.38140.57-0.551-0.14040.0761-0.01920.05870.1556-0.0510.5462-0.04430.01790.4748-0.00290.44137.04547.2246-6.1798
707.5362-2.266-2.68577.24625.3285.8241-0.1799-1.0603-0.11560.2639-0.3335-2.4746-0.5330.348-0.27150.72990.00520.22310.7860.0651.091160.417838.70180.2633
711.7472-1.67740.19426.6003-0.48730.5579-0.0217-0.11090.3232-0.45020.0097-0.8118-0.10890.1567-0.14340.55920.02460.13390.4528-0.01710.595550.672137.15051.4181
725.56550.59961.20881.344-0.02411.5109-0.41720.92370.6104-0.53480.2983-0.1744-0.07710.25640.00060.5687-0.110.00150.48820.03420.369327.710554.0665-10.462
739.76271.21251.03082.99450.43992.7946-0.07980.6154-0.2707-0.40330.46610.26660.8114-0.359-0.8560.7768-0.12650.0840.47420.12730.488733.996363.4015-12.803
741.6528-3.6937-2.38699.31214.88594.78250.6522-0.1740.1038-1.1475-0.0299-1.66760.0936-0.60620.2630.3238-0.0491-0.27270.56570.0810.294250.280176.2187-3.471
756.62624.37562.7164.30863.61014.87870.0080.6186-1.31290.240.433-0.56920.98920.12350.21710.6628-0.06390.02010.5210.15570.525840.275666.116-13.2932
761.59820.57530.2293.75120.38572.13470.030.17520.21590.11290.00490.450.269-0.14220.06520.3927-0.04280.04080.37640.09820.36237.025876.8723-12.7727
771.70950.4629-0.80292.62570.62081.64640.0624-0.52780.09520.4675-0.08850.2754-0.0536-0.56140.0040.5027-0.03360.00540.43560.12810.400536.173775.4519-3.8302
783.19621.0661-0.5042.79391.9521.91550.3674-0.6493-0.57941.49380.0545-0.62060.02540.0697-0.00830.9325-0.1241-0.14730.58790.11530.538451.674286.92711.1673
795.01364.68141.23436.40631.91481.33720.50630.0014-0.28950.9629-0.1396-0.10190.1123-0.1359-0.2650.6213-0.08430.06240.55280.02740.442545.432776.14641.715
804.0471-1.02073.15343.1249-0.31716.13550.4037-0.4747-1.1843-0.0360.72580.9585-0.391-1.52970.43240.4319-0.0946-0.01730.68750.17580.811924.462669.1644-12.6758
817.10571.7642-0.22222.6191-1.30398.1401-0.19920.22791.75-0.42980.45131.0161-0.6864-1.32830.0160.49640.1119-0.06610.58620.10170.854948.176178.971145.8138
825.8526-2.0259-0.34543.00470.62664.44060.44141.16970.1259-0.9332-0.2697-1.0333-0.1088-0.251-0.18930.50190.04460.12340.41360.0520.421535.6283114.130959.0607
835.42271.7512-3.33562.4832-0.28962.6191-0.78730.105-1.22370.0987-0.33760.68591.1712-1.25090.85510.5817-0.22190.1110.5915-0.07590.853663.8554112.265335.2432
845.1868-1.9559-0.03013.7864-1.04763.93560.1324-0.04790.4395-0.1633-0.0916-0.20220.2155-0.2526-0.24260.3354-0.01710.13470.2628-0.00750.588678.147102.170644.015
855.99930.8457-1.31124.4033-0.49057.39890.0060.30050.5-0.4325-0.0442-0.1764-0.61710.05660.01560.38840.04110.01920.3103-0.01510.357948.850879.313765.5136
863.3544-1.66191.22741.7841-1.06341.01290.00850.07130.38460.0336-0.27410.16320.47270.05330.17050.3989-0.00430.07370.3664-0.01130.430249.3054122.470567.8113
876.9559-0.2127-1.36084.88711.86115.52320.14051.69180.0001-1.2343-0.0012-1.00750.03650.5078-0.83021.27650.09470.04660.77140.1410.559839.547341.8872-16.1988
882.7264-0.4116-1.30494.01151.40073.5158-0.5067-0.5181-1.9650.60540.14450.1560.5180.58581.18890.9087-0.19870.28990.8007-0.04950.989528.934880.26133.3929
899.24474.1419-6.87586.6491-3.20136.5889-1.0436-2.4931-0.5319-0.9369-0.8543-0.30140.89682.53490.64920.38670.1094-0.1060.5673-0.08070.88660.850651.706451.8716
903.40933.76881.90568.96420.14922.80390.961-1.4278-0.11521.8414-1.3998-0.18891.0202-0.4449-0.3840.65550.3760.01050.5442-0.01030.426621.725122.383885.8656
912.3742-2.6432-2.864.27542.12464.54620.2136-0.99362.50670.1020.5501-1.3126-0.7520.5539-0.33650.6473-0.1147-0.10310.6375-0.05210.333387.9519131.229531.2783
924.45794.9779-5.47578.6839-5.04896.9466-0.6018-0.62930.6647-1.11520.199-0.73891.2434-0.556-0.03670.36730.0213-0.09130.5621-0.15470.8868102.401583.119139.9171
938.07050.2746-0.64614.2507-0.33998.62160.4637-0.5832-0.22410.4223-0.7572-0.0581-0.0613-0.22790.14590.53630.12680.0120.69980.14010.453132.89968.923590.3906
945.9933-0.215-3.4363.84983.51516.47710.81740.94741.95960.3187-0.3901-0.6083-0.4362-0.51680.21670.7572-0.18810.03940.5911-0.10540.514162.4088149.783774.6286
953.0795-3.19370.17879.1001-4.57356.42150.35860.02060.77853.1154-0.87410.3480.03481.14870.24750.42880.0741-0.02490.7020.08750.551124.111550.75359.1952
962.3494-1.26410.34763.48130.17635.64930.83970.26210.2075-1.4029-0.9648-1.11620.7360.84870.47710.4821-0.1069-0.06390.65210.04450.46843.03972.2429-22.9679
精密化 TLSグループ
IDRefine-IDRefine TLS-IDSelection detailsAuth asym-IDAuth seq-ID
1X-RAY DIFFRACTION1chain 'A' and (resid 1 through 11 )A1 - 11
2X-RAY DIFFRACTION2chain 'A' and (resid 12 through 21 )A12 - 21
3X-RAY DIFFRACTION3chain 'A' and (resid 22 through 38 )A22 - 38
4X-RAY DIFFRACTION4chain 'A' and (resid 39 through 61 )A39 - 61
5X-RAY DIFFRACTION5chain 'A' and (resid 62 through 76 )A62 - 76
6X-RAY DIFFRACTION6chain 'A' and (resid 77 through 104 )A77 - 104
7X-RAY DIFFRACTION7chain 'A' and (resid 105 through 117 )A105 - 117
8X-RAY DIFFRACTION8chain 'A' and (resid 118 through 131 )A118 - 131
9X-RAY DIFFRACTION9chain 'A' and (resid 132 through 139 )A132 - 139
10X-RAY DIFFRACTION10chain 'A' and (resid 140 through 154 )A140 - 154
11X-RAY DIFFRACTION11chain 'B' and (resid 2 through 12 )B2 - 12
12X-RAY DIFFRACTION12chain 'B' and (resid 13 through 21 )B13 - 21
13X-RAY DIFFRACTION13chain 'B' and (resid 22 through 30 )B22 - 30
14X-RAY DIFFRACTION14chain 'B' and (resid 31 through 38 )B31 - 38
15X-RAY DIFFRACTION15chain 'B' and (resid 39 through 61 )B39 - 61
16X-RAY DIFFRACTION16chain 'B' and (resid 62 through 76 )B62 - 76
17X-RAY DIFFRACTION17chain 'B' and (resid 77 through 103 )B77 - 103
18X-RAY DIFFRACTION18chain 'B' and (resid 104 through 117 )B104 - 117
19X-RAY DIFFRACTION19chain 'B' and (resid 118 through 131 )B118 - 131
20X-RAY DIFFRACTION20chain 'B' and (resid 132 through 139 )B132 - 139
21X-RAY DIFFRACTION21chain 'B' and (resid 140 through 154 )B140 - 154
22X-RAY DIFFRACTION22chain 'C' and (resid 2 through 11 )C2 - 11
23X-RAY DIFFRACTION23chain 'C' and (resid 12 through 21 )C12 - 21
24X-RAY DIFFRACTION24chain 'C' and (resid 22 through 50 )C22 - 50
25X-RAY DIFFRACTION25chain 'C' and (resid 51 through 62 )C51 - 62
26X-RAY DIFFRACTION26chain 'C' and (resid 63 through 76 )C63 - 76
27X-RAY DIFFRACTION27chain 'C' and (resid 77 through 103 )C77 - 103
28X-RAY DIFFRACTION28chain 'C' and (resid 104 through 117 )C104 - 117
29X-RAY DIFFRACTION29chain 'C' and (resid 118 through 124 )C118 - 124
30X-RAY DIFFRACTION30chain 'C' and (resid 125 through 131 )C125 - 131
31X-RAY DIFFRACTION31chain 'C' and (resid 132 through 139 )C132 - 139
32X-RAY DIFFRACTION32chain 'C' and (resid 140 through 154 )C140 - 154
33X-RAY DIFFRACTION33chain 'D' and (resid 3 through 11 )D3 - 11
34X-RAY DIFFRACTION34chain 'D' and (resid 12 through 21 )D12 - 21
35X-RAY DIFFRACTION35chain 'D' and (resid 22 through 37 )D22 - 37
36X-RAY DIFFRACTION36chain 'D' and (resid 38 through 50 )D38 - 50
37X-RAY DIFFRACTION37chain 'D' and (resid 51 through 62 )D51 - 62
38X-RAY DIFFRACTION38chain 'D' and (resid 63 through 76 )D63 - 76
39X-RAY DIFFRACTION39chain 'D' and (resid 77 through 103 )D77 - 103
40X-RAY DIFFRACTION40chain 'D' and (resid 104 through 117 )D104 - 117
41X-RAY DIFFRACTION41chain 'D' and (resid 118 through 131 )D118 - 131
42X-RAY DIFFRACTION42chain 'D' and (resid 132 through 144 )D132 - 144
43X-RAY DIFFRACTION43chain 'D' and (resid 145 through 153 )D145 - 153
44X-RAY DIFFRACTION44chain 'E' and (resid 2 through 11 )E2 - 11
45X-RAY DIFFRACTION45chain 'E' and (resid 12 through 21 )E12 - 21
46X-RAY DIFFRACTION46chain 'E' and (resid 22 through 62 )E22 - 62
47X-RAY DIFFRACTION47chain 'E' and (resid 63 through 76 )E63 - 76
48X-RAY DIFFRACTION48chain 'E' and (resid 77 through 103 )E77 - 103
49X-RAY DIFFRACTION49chain 'E' and (resid 104 through 117 )E104 - 117
50X-RAY DIFFRACTION50chain 'E' and (resid 118 through 124 )E118 - 124
51X-RAY DIFFRACTION51chain 'E' and (resid 125 through 144 )E125 - 144
52X-RAY DIFFRACTION52chain 'E' and (resid 145 through 153 )E145 - 153
53X-RAY DIFFRACTION53chain 'F' and (resid 2 through 11 )F2 - 11
54X-RAY DIFFRACTION54chain 'F' and (resid 12 through 21 )F12 - 21
55X-RAY DIFFRACTION55chain 'F' and (resid 22 through 50 )F22 - 50
56X-RAY DIFFRACTION56chain 'F' and (resid 51 through 62 )F51 - 62
57X-RAY DIFFRACTION57chain 'F' and (resid 63 through 76 )F63 - 76
58X-RAY DIFFRACTION58chain 'F' and (resid 77 through 104 )F77 - 104
59X-RAY DIFFRACTION59chain 'F' and (resid 105 through 117 )F105 - 117
60X-RAY DIFFRACTION60chain 'F' and (resid 118 through 144 )F118 - 144
61X-RAY DIFFRACTION61chain 'F' and (resid 145 through 153 )F145 - 153
62X-RAY DIFFRACTION62chain 'G' and (resid 1 through 11 )G1 - 11
63X-RAY DIFFRACTION63chain 'G' and (resid 12 through 21 )G12 - 21
64X-RAY DIFFRACTION64chain 'G' and (resid 22 through 37 )G22 - 37
65X-RAY DIFFRACTION65chain 'G' and (resid 38 through 50 )G38 - 50
66X-RAY DIFFRACTION66chain 'G' and (resid 51 through 61 )G51 - 61
67X-RAY DIFFRACTION67chain 'G' and (resid 62 through 76 )G62 - 76
68X-RAY DIFFRACTION68chain 'G' and (resid 77 through 103 )G77 - 103
69X-RAY DIFFRACTION69chain 'G' and (resid 104 through 117 )G104 - 117
70X-RAY DIFFRACTION70chain 'G' and (resid 118 through 124 )G118 - 124
71X-RAY DIFFRACTION71chain 'G' and (resid 125 through 139 )G125 - 139
72X-RAY DIFFRACTION72chain 'G' and (resid 140 through 154 )G140 - 154
73X-RAY DIFFRACTION73chain 'H' and (resid 2 through 11 )H2 - 11
74X-RAY DIFFRACTION74chain 'H' and (resid 12 through 21 )H12 - 21
75X-RAY DIFFRACTION75chain 'H' and (resid 22 through 30 )H22 - 30
76X-RAY DIFFRACTION76chain 'H' and (resid 31 through 103 )H31 - 103
77X-RAY DIFFRACTION77chain 'H' and (resid 104 through 117 )H104 - 117
78X-RAY DIFFRACTION78chain 'H' and (resid 118 through 131 )H118 - 131
79X-RAY DIFFRACTION79chain 'H' and (resid 132 through 144 )H132 - 144
80X-RAY DIFFRACTION80chain 'H' and (resid 145 through 153 )H145 - 153
81X-RAY DIFFRACTION81chain 'I' and (resid 9 through 23 )I9 - 23
82X-RAY DIFFRACTION82chain 'J' and (resid 9 through 23 )J9 - 23
83X-RAY DIFFRACTION83chain 'K' and (resid 9 through 23 )K9 - 23
84X-RAY DIFFRACTION84chain 'L' and (resid 8 through 23 )L8 - 23
85X-RAY DIFFRACTION85chain 'M' and (resid 8 through 23 )M8 - 23
86X-RAY DIFFRACTION86chain 'N' and (resid 6 through 23 )N6 - 23
87X-RAY DIFFRACTION87chain 'O' and (resid 9 through 22 )O9 - 22
88X-RAY DIFFRACTION88chain 'P' and (resid 9 through 22 )P9 - 22
89X-RAY DIFFRACTION89chain 'Q' and (resid 11 through 17 )Q11 - 17
90X-RAY DIFFRACTION90chain 'R' and (resid 11 through 18 )R11 - 18
91X-RAY DIFFRACTION91chain 'T' and (resid 11 through 17 )T11 - 17
92X-RAY DIFFRACTION92chain 'U' and (resid 11 through 17 )U11 - 17
93X-RAY DIFFRACTION93chain 'V' and (resid 11 through 17 )V11 - 17
94X-RAY DIFFRACTION94chain 'W' and (resid 11 through 17 )W11 - 17
95X-RAY DIFFRACTION95chain 'X' and (resid 11 through 17 )X11 - 17
96X-RAY DIFFRACTION96chain 'Y' and (resid 11 through 17 )Y11 - 17

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万見について

-
お知らせ

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2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

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2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

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2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月:コロナウイルスプロテーアーゼ

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2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか? / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

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2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例:em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

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万見 (Yorodumi)

幾万の構造データを、幾万の視点から

  • 万見(Yorodumi)は、EMDB/PDB/SASBDBなどの構造データを閲覧するためのページです。
  • EM Navigatorの詳細ページの後継、Omokage検索のフロントエンドも兼ねています。

関連情報:EMDB / PDB / SASBDB / 3つのデータバンクの比較 / 万見検索 / 2016年8月31日: 新しいEM Navigatorと万見 / 万見文献 / Jmol/JSmol / 機能・相同性情報 / 新しいEM Navigatorと万見の変更点

他の情報も見る