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Yorodumi- PDB-7d8n: Structure of the inactive form of wild-type peptidylarginine deim... -
+Open data
-Basic information
Entry | Database: PDB / ID: 7d8n | ||||||||||||
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Title | Structure of the inactive form of wild-type peptidylarginine deiminase type III (PAD3) crystallized under the condition with high concentrations of Ca2+ | ||||||||||||
Components | Protein-arginine deiminase type-3 | ||||||||||||
Keywords | HYDROLASE / citrullination / inactive / isozyme / post-translational modification / calcium ion | ||||||||||||
Function / homology | Function and homology information protein-arginine deiminase / protein-arginine deiminase activity / Chromatin modifying enzymes / intracellular membrane-bounded organelle / calcium ion binding / nucleoplasm / identical protein binding / nucleus / cytosol / cytoplasm Similarity search - Function | ||||||||||||
Biological species | Homo sapiens (human) | ||||||||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.753 Å | ||||||||||||
Authors | Funabashi, K. / Sawata, M. / Unno, M. | ||||||||||||
Funding support | Japan, 3items
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Citation | Journal: Arch.Biochem.Biophys. / Year: 2021 Title: Structures of human peptidylarginine deiminase type III provide insights into substrate recognition and inhibitor design. Authors: Funabashi, K. / Sawata, M. / Nagai, A. / Akimoto, M. / Mashimo, R. / Takahara, H. / Kizawa, K. / Thompson, P.R. / Ite, K. / Kitanishi, K. / Unno, M. | ||||||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 7d8n.cif.gz | 502 KB | Display | PDBx/mmCIF format |
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PDB format | pdb7d8n.ent.gz | 410.3 KB | Display | PDB format |
PDBx/mmJSON format | 7d8n.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/d8/7d8n ftp://data.pdbj.org/pub/pdb/validation_reports/d8/7d8n | HTTPS FTP |
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-Related structure data
Related structure data | 7d4ySC 7d56C 7d5rC 7d5vC 7danC S: Starting model for refinement C: citing same article (ref.) |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Ens-ID: 1
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